GgaEX1007773 @ galGal4
Exon Skipping
Gene
ENSGALG00000026890 | ANGPT4
Description
angiopoietin 4 [Source:HGNC Symbol;Acc:HGNC:487]
Coordinates
chr20:10242764-10245306:+
Coord C1 exon
chr20:10242764-10242930
Coord A exon
chr20:10243350-10243480
Coord C2 exon
chr20:10243555-10245306
Length
131 bp
Sequences
Splice sites
3' ss Seq
GATGGCACGCGTGGCCGCAGGCT
3' ss Score
3.74
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
Exon sequences
Seq C1 exon
GGCTTTGGGGACGCGGCGGGGGAGCACTGGCTGGGCAATGAAGCTGTGCACCTCCTGACGAGCCGGGAACCCTACGTGCTGCGCGTGGAGCTGCGGGACTGGGAGGGCAGCCAGGTCTATGCCCACTATGGGAGGTTCCAGCTGGACAGCGAGCGGCAGCTCTACAG
Seq A exon
GCTCTCACTGCAGGACTACAGCGGCACGGCCGGGCAGCAGAGCGGCTTGGCCATGCAAGGCACCAACTTCAGCACCCGCGATGCTGACAACGACAACTGCCTCTGCAAGTGTGCCCAGATGCTGTCAGGAG
Seq C2 exon
GGTGGTGGTTCGACGCCTGCGGGCTCTCCAACCTGAATGGCATCTACTACCCGGCGCGGCACAACATCCGCAAGCTGAACGGCATCCGCTGGCACTACTTCCAGGGGCCCAGCTACTCGCTGAAGGGCACCCGCATGCTGATACGGCCCGCGGGCTTTTAGCCATCCGGAGCGGTGCAGCGGGAGGACGGAGCCCCTGCAGAGCTTTCCCCCCTTATTTCCCTCTCGCTCTTGTTTCTCTCAGATCTCGGCGCTGACACTGAGCCAGCCCCACCCCTGCAAGCTGCAGCGCGTGGATCCCGTTCCCTCCTGGTTTCTCCCTATTTCCCCCATGTCTGCAGGGCTCCGGGCTCCACGCTGTGCCGGGGTGTGCGTCTGGGACCACCAGACCTCCTGCACGAGTCACGCGGGGGCAGACAGACCACATTTTGCCTTTTCTATACATTTTAGGGCACTGCCCTAAATTCCCCATTGCTTTGCTTTTCCTGCAGGATGAGCAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000026890-'6-17,'6-14,8-17
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.044 C2=0.000
Domain overlap (PFAM):
C1:
PF0014713=Fibrinogen_C=FE(25.6=100)
A:
PF0014713=Fibrinogen_C=FE(20.5=100)
C2:
PF0014713=Fibrinogen_C=PD(23.3=92.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATGAAGCTGTGCACCTCCTG
R:
CTGGGCCCCTGGAAGTAGTG
Band lengths:
243-374
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]