RnoALTA0003423-2/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000005008 | Angpt4
Description
angiopoietin 4 [Source:RGD Symbol;Acc:1307539]
Coordinates
chr3:147449445-147453748:+
Coord C1 exon
chr3:147449445-147449611
Coord A exon
chr3:147453195-147453617
Coord C2 exon
chr3:147453618-147453748
Length
423 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGC
5' ss Score
8.07
3' ss Seq
TTTGTGCCTTCCACTCACAGTTC
3' ss Score
9.86
Exon sequences
Seq C1 exon
GGTTTTGGTAATGTGGCTAGAGAACACTGGCTGGGCAATGAGGCTGTGCACAGCCTCACCAGCAGAACGGCCTACTTGCTACGTGTGGAGCTGCATGACTGGGAAGGCCACCAGACCTCCATCCAGTATGAGAACTTCCAGCTGGGCAGCGAGAGGCAGCGGTACAG
Seq A exon
TTCTCTAGGACCCAAATCCAGACACTTTTAAAGGACCAGCAGCGGGGCTGGAGAGATGGCTCAGTGGTTAAGAGCACCCGAGTGCTCTTCCAGAGGTCATGAGTTCAATTCCCAGCAACCACATGGTGGCTCACAACCATCTGTAAAGAGATCTGATGCCCTCTTCTGGTGTATCTGAAGACAGCTACAGTGTACTTATATATAATAAATAAATAAATCTTTAAAGGACCAGCAGCAGTGAGCGCTGTGATCTCAGGGTGACAAGTAAGGAGGGCCACCATGAAGGACATGACCTTAGCCTCACAGCAGGGTGCGTTTTCTCAAGCAAAAATAACAGGTTGGAAACTACCAGAACAGAACCCCTGGGGGAGCCCCAGCCTGACTCTGTACCCCTTTCTTTTCCCACCTCACCACGGCCTCCAG
Seq C2 exon
CCTCTCTGTGAATGACAGCAGCATCTCAGCAAGGCTCAAGAACAGCCTGGCTCCTCAGGGCACCAAGTTCAGTACCAAAGACATGGACAATGATAACTGCATGTGCAAATGTGCTCAGATGCTGTCTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005008-13-8,13-7-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.067
Domain overlap (PFAM):
C1:
PF0014713=Fibrinogen_C=FE(25.6=100)
A:
NA
C2:
PF0014713=Fibrinogen_C=FE(20.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTTTTGGTAATGTGGCTAGAGA
R:
AGACAGCATCTGAGCACATTTG
Band lengths:
294-717
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]