DreEX6028956 @ danRer10
Exon Skipping
Gene
ENSDARG00000053158 | prss56
Description
protease, serine, 56 [Source:ZFIN;Acc:ZDB-GENE-070912-579]
Coordinates
chr2:45203417-45205358:+
Coord C1 exon
chr2:45203417-45203525
Coord A exon
chr2:45204964-45205120
Coord C2 exon
chr2:45205216-45205358
Length
157 bp
Sequences
Splice sites
3' ss Seq
TCTCCCTCTTTATATTGTAGTTT
3' ss Score
9.25
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
GAGCCGCAGTGAGAGTTACTGGACTGCAGTAGTGGGAGAGTTTGACCTCACTAAAACTGACGCGGATGAGCAGATCATGAAGGTCAATCGCATTATTACCCACCCGAAG
Seq A exon
TTTAACCCAAAGACGTTCAATAATGACATTGCTCTGGTGGAGCTGAGCTCTCCGGTGATTCTGTCTGAACGGGTCACTCCTGTCTGTCTGCCCTCTGACTTGGATCCTCCGGCTGGCACACCCTGTTTAGTGGCCGGCTGGGGATCTTTGTATGAAG
Seq C2 exon
ACGGCCCATCTGCAGATGTGGTGATGGAGGCGAAGGTGCCCCTGTTGTCTCAAGCCACATGTCAAAGTGCATTGGGGAAAGAGCTGCTCACTAACACCATGTTCTGTGCTGGCTACCTGTCCGGGGGCATCGACTCATGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000053158-'5-6,'5-5,6-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(25.4=100)
A:
PF0008921=Trypsin=FE(36.6=100)
C2:
PF0008921=Trypsin=FE(20.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCCGCAGTGAGAGTTACTG
R:
CTGGCATGAGTCGATGCCC
Band lengths:
252-409
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]