RnoEX6040748 @ rn6
Exon Skipping
Gene
ENSRNOG00000029865 | Prss56
Description
serine protease 56 [Source:RGD Symbol;Acc:1563955]
Coordinates
chr9:94280971-94281707:+
Coord C1 exon
chr9:94280971-94281070
Coord A exon
chr9:94281157-94281316
Coord C2 exon
chr9:94281565-94281707
Length
160 bp
Sequences
Splice sites
3' ss Seq
TACCGCCATCTGCTCTCTAGTTT
3' ss Score
6.13
5' ss Seq
AAGGTATTG
5' ss Score
7.76
Exon sequences
Seq C1 exon
TGCCTCGAATGAGCTTCTGTGGACTGTGATGCTAGCCGAGGGACCCCAGGGGGAGCAAGCAGAGGAAGTGCAGGTGAATCGTATCTTGCCCCACCCTAAG
Seq A exon
TTTGACCCGCAGACTTTTCACAATGACCTAGCGTTGGTACAGCTGTGGACGCCTGTGAACTCAGAGGGGCCTGCGCGCCCCATTTGCCTACCCGAGGGTTCTCGGGAGCCTCCTGCCGGCACTCCCTGCACCATCGCAGGCTGGGGGGCTCTCTTCGAAG
Seq C2 exon
ACGGGCCTGAGTCTGAGGCAGTGAGGGAGGCCCGCGTTCCGCTACTCAGTGCAGACACCTGTCAAAAGGCCCTGGGGCCTGGGCTGAGTCCCAGCACCATGCTCTGCGCTGGTTACCTGGCAGGGGGCATCGACTCATGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000029865-'5-6,'5-5,6-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.412 A=0.204 C2=0.125
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(14.5=100)
A:
PF0008921=Trypsin=FE(23.2=100)
C2:
PF0008921=Trypsin=FE(20.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCCTCGAATGAGCTTCTGTG
R:
CTGGCATGAGTCGATGCCC
Band lengths:
243-403
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]