DreEX6028957 @ danRer10
Exon Skipping
Gene
ENSDARG00000053158 | prss56
Description
protease, serine, 56 [Source:ZFIN;Acc:ZDB-GENE-070912-579]
Coordinates
chr2:45202196-45205120:+
Coord C1 exon
chr2:45202196-45202385
Coord A exon
chr2:45203417-45203525
Coord C2 exon
chr2:45204964-45205120
Length
109 bp
Sequences
Splice sites
3' ss Seq
ATATTTGTCCTGTCACTTAGGAG
3' ss Score
7.11
5' ss Seq
AAGGTAAAC
5' ss Score
8.14
Exon sequences
Seq C1 exon
CTGTGTGTGGCCAGCGCTTCTCGGTCACTCAGAATGGGACTCAACCCAGGGCTCGTATCATTGGAGGATCTCCTGCTCCTCTGGGCAGCTGGCCATGGCTAGTGAACCTGCGGCTGGACGGGGCTCTGATGTGTGGAGGTGTGCTGGTGGATAGCTCGTGGGTCCTCACTGCTGCACACTGCTTCGCTGG
Seq A exon
GAGCCGCAGTGAGAGTTACTGGACTGCAGTAGTGGGAGAGTTTGACCTCACTAAAACTGACGCGGATGAGCAGATCATGAAGGTCAATCGCATTATTACCCACCCGAAG
Seq C2 exon
TTTAACCCAAAGACGTTCAATAATGACATTGCTCTGGTGGAGCTGAGCTCTCCGGTGATTCTGTCTGAACGGGTCACTCCTGTCTGTCTGCCCTCTGACTTGGATCCTCCGGCTGGCACACCCTGTTTAGTGGCCGGCTGGGGATCTTTGTATGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000053158-'4-5,'4-4,5-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.094 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PU(31.0=68.8)
A:
PF0008921=Trypsin=FE(25.4=100)
C2:
PF0008921=Trypsin=FE(36.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAACCCAGGGCTCGTATCAT
R:
AGTCAGAGGGCAGACAGACAG
Band lengths:
250-359
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]