GgaEX6046370 @ galGal3
Exon Skipping
Gene
ENSGALG00000004463 | F1NSE5_CHICK
Description
NA
Coordinates
chr9:16700409-16701975:+
Coord C1 exon
chr9:16700409-16700545
Coord A exon
chr9:16700624-16700732
Coord C2 exon
chr9:16701816-16701975
Length
109 bp
Sequences
Splice sites
3' ss Seq
GCTCTCCATCCCTGTGCCAGGAA
3' ss Score
6.9
5' ss Seq
AAGGTTGGT
5' ss Score
8.46
Exon sequences
Seq C1 exon
CGCATCATGGGCGGCAACGTGGCCAGGCACGGGGCTTGGCCGTGGCTGGTGTCAGTGCGGCTGCACGGGGAGCTGGTGTGCGGTGGGGTGTTGGTGAGCCGCGCGTGGGCTCTCACCGCCGCCCACTGCTTCAATGG
Seq A exon
GAACCAGAACGAGTTGGCGTGGACGGTGGTGGTGGGCGACCACGAGCTGGGCAAGGCAGACCCCGGGGAGCGGGCAGTGCCCGTGCGGCGCATCGTGCCTCACCCCAAG
Seq C2 exon
TTCAACCCCAAGACGTTTCATGGGGATCTGGCGCTGCTGGAGCTGGCGGAGCCGCTGGCACCGTCGGGCACCGTGAGCCCCGTGTGCCTGCCCAGCGGTACCACCGAGCCCAGCCCCGGCACCCCCTGCCACATCGCGGGGTGGGGGTCCCTGTATGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004463-'0-1,'0-0,1-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.189 C2=0.185
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PU(19.1=95.7)
A:
PF0008921=Trypsin=FE(15.7=100)
C2:
PF0008921=Trypsin=FE(23.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTGGCCGTGGCTGGTGT
R:
GGCTGGGCTCGGTGGTAC
Band lengths:
218-327
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]