DreEX6029763 @ danRer10
Exon Skipping
Gene
ENSDARG00000016304 | tfdp1b
Description
transcription factor Dp-1, b [Source:ZFIN;Acc:ZDB-GENE-040426-1746]
Coordinates
chr1:235116-239015:+
Coord C1 exon
chr1:235116-235195
Coord A exon
chr1:237786-237846
Coord C2 exon
chr1:238906-239015
Length
61 bp
Sequences
Splice sites
3' ss Seq
ACCTGTTCTCTGATCTGCAGGCT
3' ss Score
9.39
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
Exon sequences
Seq C1 exon
CTGAACTGCAGTCTGACCGGTGGTGGACTCTCGCTCAGCTCATCTGCTCCATCTTCATCATCTTCATCATGGCGAAAGAT
Seq A exon
GCTGGACTCAAGGAAACGAATGGAGAGATTAAGCTGTTTATCAACCAGAGTCCTGGAAAAG
Seq C2 exon
CTGCAGGTGTGCTTCAGCTGCTGACTGTTCATCCAGCGTCCATCACTACAGTCAAGCAGATTCTGCCTAAAACTCTGACGGTCACTGGAGCTCATGTGCTGCCACACATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000016304-'6-5,'6-2,7-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.200 C2=0.124
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCAGCTCATCTGCTCCATC
R:
ATGAGCTCCAGTGACCGTCAG
Band lengths:
143-204
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]