GgaEX1003645 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1P3E8]
Coordinates
chr1:136660650-136687243:-
Coord C1 exon
chr1:136686938-136687243
Coord A exon
chr1:136673678-136673744
Coord C2 exon
chr1:136660650-136660756
Length
67 bp
Sequences
Splice sites
3' ss Seq
AAAGTTACTTTCTTTAATAGGCT
3' ss Score
6.76
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
TGTGCGGGGAGGAGGGGGGGGCGGCGAGGCGTCGCTCCCACGTGCTGCCTCTGAGCGGGGGCGTCGCTTCGACAGAGCGGGGCTGGGGGGGAACTTGGTGCTATCCCGGAGGGTTCTGTTCTGAAGCGAAACGCGCTGGGGAGCAGTCGGGAATTGGGGCGGTGCAAAGTTTGCCTCTCATTGTGGAGAGCTGACTGACGTTGGCTGTGTTTGCTTTCTAGAAAATAGCATCGTCGTCCCAGCGTCCCACAGGCAGCAGGATTGTAAGAGGATTGCCTGCTAGGCTGGGGTAACATGGCAAAAGAT
Seq A exon
GCTGGACTAATTGAAGCCAATGGAGAGCTTAAGGTGTTTATAGACCAAAACCTAAGTCCTGGAAAAG
Seq C2 exon
GAGTTGTTTCTCTATTGGCTGTTCATCCCTCTACAGTAAATACACTCGGAAAACAGCTCCTGCCAAAAACATTTGGACGGTCTAATGTCAACATTGCACAACAAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016823_MULTIEX1-2/5=C1-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.065
Domain overlap (PFAM):
C1:
NA
A:
PF059717=Methyltransf_10=FE(29.3=100)
C2:
PF059717=Methyltransf_10=FE(46.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGACTGACGTTGGCTGTGTT
R:
CAGGAGCTGTTTTCCGAGTGT
Band lengths:
178-245
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]