BtaEX0036252 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000019645 | TFDP1
Description
Bos taurus transcription factor Dp-1 (TFDP1), mRNA. [Source:RefSeq mRNA;Acc:NM_001076029]
Coordinates
chr12:90738265-90748933:+
Coord C1 exon
chr12:90738265-90738376
Coord A exon
chr12:90745620-90745686
Coord C2 exon
chr12:90748812-90748933
Length
67 bp
Sequences
Splice sites
3' ss Seq
CTGTGTTGTTGTCCCCGCAGGCC
3' ss Score
12.61
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
Exon sequences
Seq C1 exon
GCCTGGCTCATCCCTCCTCTCTCCTCCTTTTTACCAGGAAAACCATTTTTCTTTTCTGGAGGGTGACCATTACTAGCATCGATTTCACGGATCTGGTAACATGGCAAAAGAT
Seq A exon
GCCGGTCTAATTGAAGCCAACGGGGAACTCAAGGTCTTCATAGACCAGAACCTCAGTCCTGGGAAAG
Seq C2 exon
GTAATTGGTACGCCTCAGAGACCTGCAGCGCCAAACACTATCGTGGTGGGAAGCCCACACACCCCTAACACTCACTTTGTCTCCCAGAACCAGCCTTCAGACCCCTCACCTTGGTCTGCCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019645_MULTIEX1-2/4=C1-4
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.625 A=0.000 C2=0.976
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
ENSBTAT00000026175fB7057
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCATCCCTCCTCTCTCCTC
R:
GTGAGTGTTAGGGGTGTGTGG
Band lengths:
182-249
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development