DreEX0078382 @ danRer10
Exon Skipping
Gene
ENSDARG00000019293 | tfdp1a
Description
transcription factor Dp-1, a [Source:ZFIN;Acc:ZDB-GENE-040426-2883]
Coordinates
chr9:35145799-35146257:+
Coord C1 exon
chr9:35145799-35145883
Coord A exon
chr9:35145958-35146024
Coord C2 exon
chr9:35146154-35146257
Length
67 bp
Sequences
Splice sites
3' ss Seq
GGTTATCTCGTTCTCCGCAGGCT
3' ss Score
9.98
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
TGACGTTTTGTTGTGGAAATTTGGCTCAGGTTTTTAAGCTAGACCAAGCATCAATTCCTCAGCCCCAGGGATCATGGCCAAAGAT
Seq A exon
GCTGGTCTGATTGAGGCCAATGGGGAGTTGAAGGTTTTCATTGATCAAAACTTGAGCCCTGGCAAAG
Seq C2 exon
GTGTGCTGTCTTTAGTAACGGTGCATCCACAGGCTTTGACTGTTGGAAAACAGCTGTTGCCAAAAACACTGGGCCCTTCCAACGTGAACATTGCACCACATATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000019293-'4-6,'4-5,5-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.250 A=0.000 C2=0.371
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTTGTGGAAATTTGGCTCAGGT
R:
TGGTGCAATGTTCACGTTGGA
Band lengths:
175-242
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]