DreEX6031341 @ danRer10
Exon Skipping
Gene
ENSDARG00000000606 | dnah7l
Description
dynein, axonemal, heavy polypeptide 7 like [Source:ZFIN;Acc:ZDB-GENE-030616-623]
Coordinates
chr1:21529172-21537640:+
Coord C1 exon
chr1:21529172-21529299
Coord A exon
chr1:21529404-21529589
Coord C2 exon
chr1:21537568-21537640
Length
186 bp
Sequences
Splice sites
3' ss Seq
GTGTTTGTATTTCTCTGCAGACT
3' ss Score
11.28
5' ss Seq
GAGGTATGT
5' ss Score
9.81
Exon sequences
Seq C1 exon
ATAAACTAGATATGGATGCAGCAGTGGAGAGTCTGTTCTTGCAAGACCCCAAAGGTAGAGTTAACTCTCTCACCACTGTGCTTGGACAGGAAGTAGACCGCTTTAACTTCCTGCTGCGTGTGCTCAAA
Seq A exon
ACTTCACTATGTACTCTGCAGAAGGCGATAGCAGGTCTGGTGGTGATGTCAGAAGAAATGGAGAAGATTTATAACAGTTTCCTGAATAACCAGGTTCCTGATCACTGGTCTAATGCTGCTTATCCATCTCTCAAACCTCTTGGCAGCTGGGTTAGAGACCTCAACCTGCGCACAGCATTTATAGAG
Seq C2 exon
AGCTGGATCACAAGGGGTCAGCCTAAGTCTTTTTGGATTTCTGGATTCTTCTTTCCTCAAGGATTCCTCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000000606-'78-82,'78-81,80-82=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(5.6=100)
A:
PF0302810=Dynein_heavy=FE(8.1=100)
C2:
PF0302810=Dynein_heavy=FE(3.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTAGATATGGATGCAGCAGTGG
R:
TCCTTGAGGAAAGAAGAATCCAGA
Band lengths:
187-373
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]