RnoEX6013950 @ rn6
Exon Skipping
Gene
ENSRNOG00000015581 | Dnah6
Description
dynein, axonemal, heavy chain 6 [Source:RGD Symbol;Acc:621797]
Coordinates
chr4:100944841-100946608:-
Coord C1 exon
chr4:100946481-100946608
Coord A exon
chr4:100945399-100945584
Coord C2 exon
chr4:100944841-100944913
Length
186 bp
Sequences
Splice sites
3' ss Seq
GATCTCTTTCGTCCTCTCAGATT
3' ss Score
10.13
5' ss Seq
GACGTACGG
5' ss Score
5.37
Exon sequences
Seq C1 exon
AATCCCTGCAAATGGAGGGTGCTTCCGAAACCCTTTTTGTCAAGGACCCGCAAGGGCGCCTGAACTCTCTGACCACCGTCCTTGGCCAAGAAGTGGACCGGTTCAACAATCTTCTGAAGTTAATACAT
Seq A exon
ATTTCTCTAGAAACACTCAACAAAGCCATTGCAGGACTCGTGGTGATGTCTGAAGAAATGGAAAAAGTGTATCAGAGTTTCCTCAACAACCAGGTTCCCTCTCTTTGGTCTAACACAGCCTACCCATCCCTGAAGCCACTGGGATCATGGGTCAAAGACCTTATTCTGAGGACTGCATTCGTGGAC
Seq C2 exon
CTGTGGCTCAAAAGAGGACAGCCCAAATCCTTCTGGATCTCCGGGTTCTTCTTTCCTCAAGGATTTCTCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015581-'75-80,'75-79,76-80=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(5.6=100)
A:
PF0302810=Dynein_heavy=FE(8.2=100)
C2:
PF0302810=Dynein_heavy=FE(3.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCAAATGGAGGGTGCTTCC
R:
TCCTTGAGGAAAGAAGAACCCG
Band lengths:
186-372
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]