DreEX6034043 @ danRer10
Exon Skipping
Gene
ENSDARG00000093198 | C3 (8 of 8)
Description
complement component 3 [Source:HGNC Symbol;Acc:HGNC:1318]
Coordinates
chr1:55334298-55337418:-
Coord C1 exon
chr1:55337259-55337418
Coord A exon
chr1:55334564-55334659
Coord C2 exon
chr1:55334298-55334448
Length
96 bp
Sequences
Splice sites
3' ss Seq
AAATCATCGCTGTAACACAGGGG
3' ss Score
1.57
5' ss Seq
TCAGTGAGT
5' ss Score
7.68
Exon sequences
Seq C1 exon
GTTGACGGCATATGTTGCGAAAGTGTTTGCCATGGCCAGTGACATCATACACATAGACCAGAATGTGATCTGCTCAGCGCTCAGGTGGCTCATAATGAACAGGCAGTTGCCTAATGGAGTCTTCAGGGAAAATGCGCCGGTTATTCACGGAGAAATGACG
Seq A exon
GGGAACGTTCAAGGGAGCAACTCAGAAGCGTCCATGACAGCGTTTGTGACCATTGCTCTGCAGGAGGGAAGGAGCCGTTGCAACGGCCAGGTCTCA
Seq C2 exon
AGTCTTGACAGCAGCATATATAAAGCCATTGCCTACCTTAAGTCTCAGTTGCAAGGGCTGATCAATCCGTACGCAGTGGCCATGGCATCTTACGCTTTAGCCAATGCGAACTCTCTCAACAAGCAAGTGCTGATGAGTAAAGCTTCCGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000093198-'26-29,'26-28,27-29=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.037 A=0.031 C2=0.000
Domain overlap (PFAM):
C1:
PF076789=A2M_comp=FE(22.9=100)
A:
PF076789=A2M_comp=FE(13.4=100)
C2:
PF076789=A2M_comp=FE(21.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATGTGATCTGCTCAGCGCTC
R:
ACTGCGTACGGATTGATCAGC
Band lengths:
176-272
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]