RnoEX0015698 @ rn6
Exon Skipping
Gene
ENSRNOG00000046834 | C3
Description
complement C3 [Source:RGD Symbol;Acc:2232]
Coordinates
chr9:9735465-9738082:+
Coord C1 exon
chr9:9735465-9735624
Coord A exon
chr9:9736439-9736537
Coord C2 exon
chr9:9737926-9738082
Length
99 bp
Sequences
Splice sites
3' ss Seq
CATTATTCTTCTCTTCACAGGGT
3' ss Score
10.37
5' ss Seq
AACGTGAGT
5' ss Score
9.54
Exon sequences
Seq C1 exon
GCTGACAGCCTATGTGGTCAAGGTCTTCTCTCTGGCTGCCAACCTCATCGCCATCGACTCTCAGGTCCTGTGTGGGGCTGTCAAATGGCTGATTCTGGAGAAACAGAAGCCAGATGGTGTCTTTCAGGAGGACGGACCAGTGATTCACCAAGAAATGATT
Seq A exon
GGTGGCTTCCGGAACACCAAGGAGGCAGATGTGTCGCTTACAGCCTTTGTCCTCATCGCACTGCAGGAAGCCAGAGATATCTGTGAGGGGCAGGTCAAC
Seq C2 exon
AGCCTTCCCGGGAGCATCAACAAGGCAGGGGAGTATCTTGAAGCCAGTTACCTGAACCTGCAGAGACCATACACAGTAGCCATTGCTGGGTATGCCCTGGCCCTGATGAACAAACTGGAGGAACCTTACCTCACCAAGTTTCTGAACACAGCCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000046834-'38-48,'38-46,39-48
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF076789=A2M_comp=FE(22.6=100)
A:
PF076789=A2M_comp=FE(13.7=100)
C2:
PF076789=A2M_comp=FE(22.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCATCGACTCTCAGGTCCTGT
R:
ATGGTCTCTGCAGGTTCAGGT
Band lengths:
180-279
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]