GgaEX6047439 @ galGal3
Exon Skipping
Gene
ENSGALG00000011509 | C3
Description
NA
Coordinates
chrUn_random:18870819-18871513:-
Coord C1 exon
chrUn_random:18871354-18871513
Coord A exon
chrUn_random:18871076-18871171
Coord C2 exon
chrUn_random:18870819-18870968
Length
96 bp
Sequences
Splice sites
3' ss Seq
TTTTCTCCCCCATTTTGCAGGGA
3' ss Score
11.47
5' ss Seq
AAAGTGAGC
5' ss Score
5.89
Exon sequences
Seq C1 exon
GTTGACAGCCTACGTGGCCAAGGTCTTTGCCATGGCCATCAACATGGTGGACATCAAGCCGGAGGTGGTTTGTGGAGCCATCAAATGGCTCATTCTGGAGAAGCAACAGCCAGATGGGCTTTTCCAAGAAGACGCTCCTGTCATCCACAAGGAGATGGTG
Seq A exon
GGAGGCTACCACGGTGCTGAGCCCAGTGTGTCCCTGACAGCCTTCGTCCTCTCCGCGCTGCAGGAATCCCAGAAGATCTGCAAGAACTACGTGAAA
Seq C2 exon
AGCCTGGATGGGAGCATTGCCAAAGCCTCCGATTACCTCTCCCGGAAATACCAATCTTTGACTCGACCCTACACGGTGGCCCTGACCTCCTACGCCCTGGCCCTAACGGGGAAACTCAACAGCGAGAAAGTCCTGATGAAGTTCTCCAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011509-'20-19,'20-18,21-19=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF076789=A2M_comp=FE(32.9=100)
A:
PF076789=A2M_comp=FE(19.3=100)
C2:
PF076789=A2M_comp=PD(29.8=96.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGGTTTGTGGAGCCATCAA
R:
ACCGTGTAGGGTCGAGTCAAA
Band lengths:
174-270
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]