DreEX6034096 @ danRer10
Exon Skipping
Gene
ENSDARG00000012694 | c3a.1
Description
complement component c3a, duplicate 1 [Source:ZFIN;Acc:ZDB-GENE-990415-35]
Coordinates
chr1:55500866-55503065:-
Coord C1 exon
chr1:55502992-55503065
Coord A exon
chr1:55501315-55501403
Coord C2 exon
chr1:55500866-55500948
Length
89 bp
Sequences
Splice sites
3' ss Seq
CATTGTTTTCTGTTCTCCAGAAT
3' ss Score
9.18
5' ss Seq
CAGGTATTT
5' ss Score
7.51
Exon sequences
Seq C1 exon
TTCAGTACAGGACTTTGTCTCTGACGCCCAACTTGAAACCACTCAGTCAGACTGGAATCACTGTGGAAATCATG
Seq A exon
AATCCACAAAACATCACAGTTTCATCAGACAAGGTATATCCAGTGAAAGGAATGAAGTCTGGAAAGTATGCCATCCCTGAGGTTGCCAG
Seq C2 exon
TCTGGGCATCTGGAAGGTCGTCACACGATTCGCAAACACTCCCCAGAAGACGTTTACTGCAGAGTTTGAGGTCAAAGAATACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000012694-'4-5,'4-4,5-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0183514=A2M_N=FE(25.3=100)
A:
PF0183514=A2M_N=FE(30.5=100)
C2:
PF0183514=A2M_N=PD(25.3=82.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGGACTTTGTCTCTGACGC
R:
CGTATTCTTTGACCTCAAACTCTGC
Band lengths:
151-240
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]