MmuEX6078716 @ mm9
Exon Skipping
Gene
ENSMUSG00000024164 | C3
Description
complement component 3 [Source:MGI Symbol;Acc:MGI:88227]
Coordinates
chr17:57364458-57365490:-
Coord C1 exon
chr17:57365420-57365490
Coord A exon
chr17:57364639-57364733
Coord C2 exon
chr17:57364458-57364540
Length
95 bp
Sequences
Splice sites
3' ss Seq
CCCTTATGCTTTCTTTACAGACC
3' ss Score
11.19
5' ss Seq
CAAGTAAAT
5' ss Score
4.44
Exon sequences
Seq C1 exon
TCTTATATCGGATCTTCACTGTGGACAACAACCTACTGCCCGTGGGCAAGACAGTCGTCATCCTCATTGAG
Seq A exon
ACCCCCGATGGCATTCCTGTCAAGAGAGACATTCTGTCTTCCAACAACCAACACGGCATCTTGCCTTTGTCTTGGAACATTCCTGAACTGGTCAA
Seq C2 exon
CATGGGGCAGTGGAAGATCCGAGCCTTTTACGAACATGCGCCGAAGCAGATCTTCTCCGCAGAGTTTGAGGTGAAGGAATACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024164-'4-4,'4-3,5-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0183514=A2M_N=FE(24.0=100)
A:
PF0183514=A2M_N=FE(32.3=100)
C2:
PF0183514=A2M_N=PD(25.0=82.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTTATATCGGATCTTCACTGTGGAC
R:
ATTCCTTCACCTCAAACTCTGCG
Band lengths:
151-246
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: