DreEX6034744 @ danRer10
Exon Skipping
Gene
ENSDARG00000090804 | gpr155a
Description
G protein-coupled receptor 155a [Source:ZFIN;Acc:ZDB-GENE-100922-89]
Coordinates
chr9:2492033-2495323:+
Coord C1 exon
chr9:2492033-2492114
Coord A exon
chr9:2492944-2493034
Coord C2 exon
chr9:2495122-2495323
Length
91 bp
Sequences
Splice sites
3' ss Seq
TTTCCTTCTGTCTTATGCAGTTT
3' ss Score
10.44
5' ss Seq
CAGGTGCAA
5' ss Score
2.83
Exon sequences
Seq C1 exon
GTCTCATCGTCCTCTCTCTGCTCCTCATGAGAAGTGAAGAGGTGAACTTTAGGCCGGGACTCACTGTGATCACCGGCTGGGG
Seq A exon
TTTGCCTTTTTTGGCTGTGAGCGTCCTTCTCCTGTCAGGACACAGAATGCCAGACACCATCGACTCTGCCTTCTTTTATGGAACCACACAG
Seq C2 exon
GTGATGTGCACATCGGTGGTGTTGTGTGTGAGTATCGCGGTGTGTGGCGTCTCTCTCGCGCTGCTCAGCAGACGAACACAAGACTATCAAAACCTTGTATCTGGATCATTGTCCGGCAGTGAAGAAGATTTGAGGATTCCCTACAACGCACCAGTTCAGGGCTCCATTGAGGATACCTGCACTTTAGGCAGCACCAACACGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000090804-'9-10,'9-9,10-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGTGAACTTTAGGCCGGGA
R:
TTCACTGCCGGACAATGATCC
Band lengths:
167-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]