RnoEX6017432 @ rn6
Exon Skipping
Gene
ENSRNOG00000018485 | Gpr155
Description
G protein-coupled receptor 155 [Source:RGD Symbol;Acc:1309162]
Coordinates
chr3:60079563-60082464:-
Coord C1 exon
chr3:60082380-60082464
Coord A exon
chr3:60082196-60082286
Coord C2 exon
chr3:60079563-60079773
Length
91 bp
Sequences
Splice sites
3' ss Seq
TGCAATGGCTCTGCTTACAGAAT
3' ss Score
6.99
5' ss Seq
CAGGTGGGA
5' ss Score
6.71
Exon sequences
Seq C1 exon
GCCTTCTAGCAGTTTCTTTGTTTCTTTTAAAGAAGCGGGAGAGCGTTCAGATCCCAGTGGGCCTCATCATCATATCTGGCTGGGG
Seq A exon
AATCCCTGCTCTCCTCGTGGGCGTGCTTCTGATAACTGGAAAACACAATGGAGACAGCGTTGACTCGGCTTTCTTTTATGGAAAAGAGCAG
Seq C2 exon
ATGATCACCACAGCAGTCACCCTGTTCTGCAGCATTCTCATAGCTGGGGTGTCACTCATGTGCATGAACCGTACCACCCAAGCTGGCCACTACGAAGGTTTCGGCCAGTCTCAGAGTCACAAACCGGTAGAGCCTGGAAGCACTGCGTTCGAGGAGAGCCCAGCGCCAACAAGTGAACCAGAGCTCTTCCCAAGTTCTATCCCAGAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018485-'16-14,'16-13,18-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.394
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGAGCGTTCAGATCCCAGTG
R:
CAGGCTCTACCGGTTTGTGAC
Band lengths:
183-274
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]