DreEX6036142 @ danRer10
Exon Skipping
Gene
ENSDARG00000032630 | neb
Description
nebulin [Source:ZFIN;Acc:ZDB-GENE-041111-216]
Coordinates
chr9:23040184-23041079:-
Coord C1 exon
chr9:23040768-23041079
Coord A exon
chr9:23040467-23040670
Coord C2 exon
chr9:23040184-23040288
Length
204 bp
Sequences
Splice sites
3' ss Seq
CTATGTTTTATCTTCACCAGGCT
3' ss Score
7.72
5' ss Seq
CAGGTCAGT
5' ss Score
8.94
Exon sequences
Seq C1 exon
TACAAGTACAAGACTGGTTATCGTAAGCAAGTTGGTCATCACATTGGAGCCCTCAGTGTCAAGGATGACCCTCTGATCATGCTGGCCTTGAACTCAGCTAAGATTGCTAGTGATGCTCTCTACAAGAAAGACTTCAACAAGTCTAAGACCAAGTACCACCTCCCAGTGGACCTGCTGTCTCTTGAGCTGGCAAAGAAGTGTCAAATCCAGGTCAATGATGCCAACTACAGGACCTACCTGCACAACTGGACCTGCCTTCCCGACTCCAATGACGTCGTCCAGGCCAGAAAAGTCTATGATCTGCGTAGCGAT
Seq A exon
GCTGTGTACAAAGCAGATATGGAGTTTATGACCGGTGTAGGATGGGTCCCCATAGGTTCTCTTGATGTCCTGAAAGCAAAGAAAGCAGCTGAAATCCTTAGCGATCGACTCTATAAACAGAAACCATCAACATTTTCATTTAAACAAGATATGCAGTCCATGCCTATGGTCCTTGCAAAGGCAAATGCTCAAATTATGAATCAG
Seq C2 exon
CGTCAGTACCATTCAGCATGGGAGGCTGACAAGATCAAGATTCATATCCCTCCTGATACGCCAGAAATTGTGCTCTCAAGTGCTAATGCAATCACCAATAGTAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000032630-'64-65,'64-64,65-65=AN
Average complexity
A_S
Mappability confidence:
88%=100=75%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0088013=Nebulin=PD(37.9=10.6),PF0088013=Nebulin=WD(100=27.9),PF0088013=Nebulin=PU(61.5=15.4)
A:
PF0088013=Nebulin=PD(30.8=11.8),PF0088013=Nebulin=WD(100=35.3),PF0088013=Nebulin=PU(55.2=23.5)
C2:
PF0088013=Nebulin=PD(37.9=31.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCCCTCAGTGTCAAGGATGA
R:
GATCTTGTCAGCCTCCCATGC
Band lengths:
301-505
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]