RnoEX6016813 @ rn6
Exon Skipping
Gene
ENSRNOG00000006783 | Neb
Description
nebulin [Source:RGD Symbol;Acc:1311134]
Coordinates
chr3:37742542-37745779:-
Coord C1 exon
chr3:37745468-37745779
Coord A exon
chr3:37743773-37743976
Coord C2 exon
chr3:37742542-37742646
Length
204 bp
Sequences
Splice sites
3' ss Seq
GGTTGACGCTTTCATTGCAGGCT
3' ss Score
6.22
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
TACAAGTACAAGGAAGGCTACCGCAAACAGCTGGGCCACCACATTGGGGCCCGGAACATCAAAGATGACCCCAAGATGATGTGGTCCATACACGTGGCCAAGATCCAGAGTGACAGGGAGTACAAGAAAGACTTTGAGAAGTGGAAGACCAAGTACAGCAGCCCAGTGGACATGCTGGGGGTGGTGCTGGCCAAGAAGTGCCAGATCCTTGTAAGCGACATAGACTATAAGCATCCTCTCCACGAGTGGACATGCCTGCCTGACCAGAACGATGTCATTCAGGCACGGAAGGCTTATGATCTCCAGAGCGAT
Seq A exon
GCTGTGTACAAGGCTGATCTTGAGTGGCTGAGAGGCATTGGCTGGGTTCCCATTGGCTCTGTAGAGGTCGAGAAGGTGAAGAGAGCAGGGGAAATCCTGAGTGACAGGAAATATCGCCAGCCTGCAGACCAGCTCAAGTTCACCTGTATTACAGACACCCCTGAAATCGTCCTGGCAAAGAATAATGCCATCACCATGAGCAAG
Seq C2 exon
CATTTATACACAGAGGCTTGGGATGCTGACAAAGCCTCCATCCATGTCATGCCAGACACCCCTGAAATCCTGCTGGCCAAGAGCAATTCTGCCAATATCAGCCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006783-'77-80,'77-79,78-80=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0088013=Nebulin=PD(37.9=10.6),PF0088013=Nebulin=WD(100=27.9),PF0088013=Nebulin=PU(55.2=15.4)
A:
PF0088013=Nebulin=PD(37.9=16.2),PF0088013=Nebulin=PU(55.2=23.5)
C2:
PF0088013=Nebulin=PD(37.9=31.4),PF0088013=Nebulin=PU(55.2=45.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCATACACGTGGCCAAGATCC
R:
GCAGGATTTCAGGGGTGTCTG
Band lengths:
300-504
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]