MmuEX6101255 @ mm10
Exon Skipping
Gene
ENSMUSG00000026950 | Neb
Description
nebulin [Source:MGI Symbol;Acc:MGI:97292]
Coordinates
chr2:52228748-52232278:-
Coord C1 exon
chr2:52231967-52232278
Coord A exon
chr2:52229956-52230159
Coord C2 exon
chr2:52228748-52228852
Length
204 bp
Sequences
Splice sites
3' ss Seq
GTTCACCACTACCTTTGCAGGCT
3' ss Score
6.85
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
TACAAGTACAAGGAAGGCTACCGCAAACAGCTGGGCCACCACATTGGTGCTCGGAACATCAAGGATGACCCCAAGATGATGTGGTCCATGCACGTGGCCAAGATCCAGAGTGACAGGGAGTACAAGAAGGACTTTGAGAAGTGGAAGACCAAGTATAGCAGCCCAGTGGACATGCTGGGCGTGGTGCTGGCCAAGAAGTGCCAGATCCTTGTAAGCGACATAGACTACAAGCATCCTCTCCATGAGTGGACATGCCTGCCTGACCAGAATGATGTCATTCAGGCACGGAAGGCCTATGATCTTCAGAGCGAT
Seq A exon
GCTGTGTACAAGGCTGATCTTGAGTGGCTGAGAGGCATCGGATGGGTTCCCATTGGCTCTGTAGAGGTCGAGAAGGTGAAGAGAGCAGGTGAAATCCTGAGTGACAGGAAGTATCGCCAGCCTGCAGACCAGCTGAAGTTCACATGTATTACAGACACCCCAGAAATTGTCCTGGCAAAGAGTAATGCCATCACTATGAGCAAG
Seq C2 exon
CATTTGTATACAGAAGCTTGGGATGCTGACAAAGCCTCCATCCATGTCATGCCAGACACCCCTGAAATCCTGCTGGCCAAGAGCAATTCTGCCAATATCAGCCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026950-'85-93,'85-92,86-93=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0088013=Nebulin=PD(37.9=10.6),PF0088013=Nebulin=WD(100=27.9),PF0088013=Nebulin=PU(55.2=15.4)
A:
PF0088013=Nebulin=PD(41.4=17.4),PF0088013=Nebulin=WD(100=40.6),PF0088013=Nebulin=PU(55.2=23.2)
C2:
PF0088013=Nebulin=PD(37.9=31.4),PF0088013=Nebulin=PU(55.2=45.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCCAAGATCCAGAGTGACA
R:
CAGCAGGATTTCAGGGGTGTC
Band lengths:
293-497
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types