DreEX6037427 @ danRer10
Exon Skipping
Gene
ENSDARG00000061517 | lrp1bb
Description
low density lipoprotein receptor-related protein 1Bb [Source:ZFIN;Acc:ZDB-GENE-070912-401]
Coordinates
chr9:36762518-36767608:+
Coord C1 exon
chr9:36762518-36762631
Coord A exon
chr9:36764804-36764953
Coord C2 exon
chr9:36767486-36767608
Length
150 bp
Sequences
Splice sites
3' ss Seq
CTTTCCTTTTAATCCCCCAGATC
3' ss Score
11.29
5' ss Seq
AGGGTAACG
5' ss Score
6.18
Exon sequences
Seq C1 exon
ATGTCACGTGTGCTGCATCTGAGTCATCCTGTCAAGATGGAACTTGCATACCAATATCCTCCTGGTGCAACCAGGTCATCGACTGTGCCGATGCCTCGGATGAAAAGAACTGCA
Seq A exon
ATCACACAGACTGCACAGACTTTTACAGGATAGGAGTTGCAGAAAAGGTCTTCGTCAGCTGCAACACTACATCGCTCTGCGTTCACCATTCCTGGCTATGTGACGGAGCCAACGACTGCGGAGATTACGCCGATGAGAGAAACTGTCAGG
Seq C2 exon
TCTCCCAGGGGCAGAAATGTGCAGAAGGCCACTTTGCCTGCCCCAGTGGGAACTGCATCTCCAGCGTGTGGCTTTGTGATGGACAGAAGGATTGTGAAGATGGTGCAGATGAGTTCCAGTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000061517-'48-48,'48-47,49-48=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005713=Ldl_recept_a=WD(100=97.4)
A:
PF0005713=Ldl_recept_a=WD(100=70.0)
C2:
PF0005713=Ldl_recept_a=WD(100=90.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGTCACGTGTGCTGCATCTG
R:
ACACTGGAACTCATCTGCACC
Band lengths:
236-386
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]