GgaEX6043171 @ galGal3
Exon Skipping
Gene
ENSGALG00000012407 | LRP1B
Description
NA
Coordinates
chr7:33562021-33565956:-
Coord C1 exon
chr7:33565843-33565956
Coord A exon
chr7:33565492-33565641
Coord C2 exon
chr7:33562021-33562143
Length
150 bp
Sequences
Splice sites
3' ss Seq
GATTTATTGTCTCCTTCCAGATA
3' ss Score
10.8
5' ss Seq
CAGGTAACT
5' ss Score
8.63
Exon sequences
Seq C1 exon
ATTCAGCATGTACTTCAACAGAATTCCGTTGTGCAGATGGGACATGCATTGGAAAATCAGCACAGTGCAACCAGATCATTGACTGTGCAGATGCTTCAGATGAAAAGAATTGTA
Seq A exon
ATAATACAAACTGTGCTTACTTCTATAAACTTGGAATCAAATCTACAGGATTTATTAGCTGTAATTCCACTTCACTTTGTATACTGCCAGAATGGATATGTGATGGATCTAATGACTGTGGAGATTATACAGATGAACTAAAATGCCCAG
Seq C2 exon
TTCAAAACAAACCCACATGTGAAGAAAATTATTTTGGTTGTCCTAGTGGAAGATGTATTCTGAACACCTGGCTTTGTGATGGGCAGAAAGACTGCGAGGATGGTGTGGATGAATTGCACTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012407-'72-80,'72-79,73-80=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005713=Ldl_recept_a=WD(100=94.9)
A:
PF0005713=Ldl_recept_a=WD(100=70.6)
C2:
PF0005713=Ldl_recept_a=WD(100=88.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCATGTACTTCAACAGAATTCCG
R:
CACAGTGCAATTCATCCACACC
Band lengths:
234-384
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]