DreEX6037532 @ danRer10
Exon Skipping
Gene
ENSDARG00000009738 | cacnb4a
Description
calcium channel, voltage-dependent, beta 4a subunit [Source:ZFIN;Acc:ZDB-GENE-080320-2]
Coordinates
chr9:38308586-38311220:+
Coord C1 exon
chr9:38308586-38308666
Coord A exon
chr9:38310962-38311020
Coord C2 exon
chr9:38311111-38311220
Length
59 bp
Sequences
Splice sites
3' ss Seq
ATTGTGTTTTTTTCACACAGGTG
3' ss Score
9.98
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
GCTGAGCACATTCCTCCATATGATGTGGTTCCTTCCATGAGGCCGGTGGTGCTAGTTGGCCCATCACTAAAGGGATACGAG
Seq A exon
GTGACAGATATGATGCAGAAAGCCCTCTTTGACTTTCTGAAACACAGGTTTGAAGGCAG
Seq C2 exon
AATATCAATCACTAGAGTAACTGCAGACATCTCTTTAGCCAAGAGATCTGTCCTGAATAACCCTAGTAAGAGAGCCATCATTGAGAGATCCAACACCAGATCCAACCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000009738-'8-9,'8-8,9-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.037 A=0.000 C2=0.184
Domain overlap (PFAM):
C1:
PF0062516=Guanylate_kin=PU(8.3=55.6)
A:
PF0062516=Guanylate_kin=FE(10.5=100)
C2:
PF0062516=Guanylate_kin=FE(20.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTGGCCCATCACTAAAGGGA
R:
CCAGGTTGGATCTGGTGTTGG
Band lengths:
137-196
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]