RnoEX0016182 @ rn6
Exon Skipping
Gene
ENSRNOG00000054274 | Cacnb3
Description
calcium voltage-gated channel auxiliary subunit beta 3 [Source:RGD Symbol;Acc:2248]
Coordinates
chr7:140321496-140322050:+
Coord C1 exon
chr7:140321496-140321576
Coord A exon
chr7:140321713-140321771
Coord C2 exon
chr7:140321941-140322050
Length
59 bp
Sequences
Splice sites
3' ss Seq
CACCACATCTTCCCCTCCAGGTC
3' ss Score
10.2
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
Exon sequences
Seq C1 exon
GCGGAACATGTCCCCCCGTATGATGTGGTGCCCTCCATGCGGCCTGTGGTGCTGGTGGGACCCTCTCTGAAAGGTTATGAG
Seq A exon
GTCACAGACATGATGCAGAAGGCTCTCTTCGACTTCCTTAAACACAGGTTTGATGGCAG
Seq C2 exon
GATCTCCATCACCCGCGTCACGGCTGACCTCTCACTGGCCAAGCGCTCTGTGCTCAACAATCCTGGCAAGAGGACCATCATCGAGCGCTCTTCTGCCCGCTCCAGCATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000054274-'17-22,'17-20,18-22
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.185 A=0.000 C2=0.105
Domain overlap (PFAM):
C1:
PF0062516=Guanylate_kin=PU(8.3=55.6)
A:
PF0062516=Guanylate_kin=FE(10.5=100)
C2:
PF0062516=Guanylate_kin=FE(20.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTATGATGTGGTGCCCTCCATG
R:
TGATGGTCCTCTTGCCAGGAT
Band lengths:
144-203
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]