GgaEX0018915 @ galGal3
Exon Skipping
Gene
ENSGALG00000012511 | B6IDG6_CHICK
Description
NA
Coordinates
chr7:36968210-36972919:-
Coord C1 exon
chr7:36972839-36972919
Coord A exon
chr7:36971005-36971063
Coord C2 exon
chr7:36968210-36968319
Length
59 bp
Sequences
Splice sites
3' ss Seq
TCTTCCTCACCTCTGCGAAGGTG
3' ss Score
5.98
5' ss Seq
GAGGTGAGA
5' ss Score
7.66
Exon sequences
Seq C1 exon
ACAGAACACGTTCCCCCGTACGACGTGGTGCCCTCAATGAGGCCCGTTGTCTTGGTGGGGCCGTCGCTGAAAGGCTATGAG
Seq A exon
GTGACAGACATGATGCAGAAAGCTCTCTTTGACTTCCTGAAGCACAGGTTTGATGGGAG
Seq C2 exon
GATATCAATAACCCGAGTGACAGCCGACATTTCTCTTGCTAAGAGGTCTGTTCTGAATAACCCAAGCAAGAGGGCAATAATTGAACGGTCAAACACACGATCCAGTTTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012511_CASSETTE2
Average complexity
S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.193 A=0.000 C2=0.141
Domain overlap (PFAM):
C1:
PF0062516=Guanylate_kin=PU(8.3=55.6)
A:
PF0062516=Guanylate_kin=FE(10.5=100)
C2:
PF0062516=Guanylate_kin=FE(20.4=100)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACGTGGTGCCCTCAATGAG
R:
TGCCCTCTTGCTTGGGTTATT
Band lengths:
136-195
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]