RnoEX0016192 @ rn6
Exon Skipping
Gene
ENSRNOG00000007666 | Cacnb4
Description
calcium voltage-gated channel auxiliary subunit beta 4 [Source:RGD Symbol;Acc:68385]
Coordinates
chr3:37978523-37988356:-
Coord C1 exon
chr3:37988276-37988356
Coord A exon
chr3:37987276-37987334
Coord C2 exon
chr3:37978523-37978632
Length
59 bp
Sequences
Splice sites
3' ss Seq
TTTTTCTCACCTCTGCAAAGGTA
3' ss Score
7.29
5' ss Seq
GAGGTGAGA
5' ss Score
7.66
Exon sequences
Seq C1 exon
ACAGAGCACATTCCTCCGTATGATGTTGTGCCATCAATGCGTCCTGTGGTGTTAGTGGGGCCATCACTGAAAGGTTATGAG
Seq A exon
GTAACAGACATGATGCAGAAAGCCCTCTTTGATTTCCTGAAGCACAGGTTTGATGGGAG
Seq C2 exon
GATATCAATAACCAGAGTGACAGCTGACATTTCTCTTGCTAAGAGGTCTGTCCTCAACAATCCTAGCAAGAGAGCAATAATTGAACGTTCAAACACCAGATCCAGCCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007666_MULTIEX1-3/3=2-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.111 A=0.000 C2=0.158
Domain overlap (PFAM):
C1:
PF0062516=Guanylate_kin=PU(8.3=55.6)
A:
PF0062516=Guanylate_kin=FE(10.5=100)
C2:
PF0062516=Guanylate_kin=FE(20.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTTAGTGGGGCCATCACTG
R:
AGGCTGGATCTGGTGTTTGAAC
Band lengths:
141-200
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]