BtaEX0006817 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000002297 | CACNB4
Description
calcium channel, voltage-dependent, beta 4 subunit [Source:HGNC Symbol;Acc:HGNC:1404]
Coordinates
chr2:44411868-44425287:+
Coord C1 exon
chr2:44411868-44411948
Coord A exon
chr2:44413234-44413292
Coord C2 exon
chr2:44425178-44425287
Length
59 bp
Sequences
Splice sites
3' ss Seq
TTTCTCTCACCTCTGCAAAGGTC
3' ss Score
7.39
5' ss Seq
GAGGTGAGA
5' ss Score
7.66
Exon sequences
Seq C1 exon
ACGGAGCACATCCCCCCCTACGACGTGGTGCCATCCATGCGTCCGGTGGTGCTGGTGGGGCCATCGCTGAAGGGTTATGAG
Seq A exon
GTCACAGACATGATGCAGAAAGCCCTCTTTGATTTCCTGAAGCACAGGTTTGATGGGAG
Seq C2 exon
GATATCAATAACAAGAGTGACAGCTGACATTTCTCTTGCTAAGAGGTCTGTGCTAAATAATCCCAGCAAGAGAGCAATAATTGAACGTTCGAACACTCGGTCCAGCTTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002297_MULTIEX1-4/7=3-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.111 A=0.000 C2=0.158
Domain overlap (PFAM):
C1:
PF0062516=Guanylate_kin=PU(8.3=55.6)
A:
PF0062516=Guanylate_kin=FE(10.5=100)
C2:
PF0062516=Guanylate_kin=FE(20.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCCATCGCTGAAGGGTTATG
R:
CTAAGCTGGACCGAGTGTTCG
Band lengths:
133-192
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development