RnoINT0028263 @ rn6
Intron Retention
Gene
ENSRNOG00000007666 | Cacnb4
Description
calcium voltage-gated channel auxiliary subunit beta 4 [Source:RGD Symbol;Acc:68385]
Coordinates
chr3:37987276-37988356:-
Coord C1 exon
chr3:37988276-37988356
Coord A exon
chr3:37987335-37988275
Coord C2 exon
chr3:37987276-37987334
Length
941 bp
Sequences
Splice sites
5' ss Seq
GAGGTACAA
5' ss Score
5.13
3' ss Seq
TTTTTCTCACCTCTGCAAAGGTA
3' ss Score
7.29
Exon sequences
Seq C1 exon
ACAGAGCACATTCCTCCGTATGATGTTGTGCCATCAATGCGTCCTGTGGTGTTAGTGGGGCCATCACTGAAAGGTTATGAG
Seq A exon
GTACAATTTCATCCGTTGCTCTCCTTTTCCTGACCAAGAACCCCGGGGACTGTCCTTTGGATTCTGGCCCCTCCAAGGTCTGAGTACAGATAGGAACCGGTGTAAGGTAGCTCATAGTGTTTGTAGGCAGTTGTGGGGAAAACCGGTAAAAACCAGAATTAAATTCTGGAGATTAATTAAACATTGCCATGTAATAAAGAAGCCTACAGGCTGTGGTACCTGACATTTCAAATTTTGCCATTCTGGCTTTGTGCTTAAATGGATAAAACAAGGGGGATGTAATATCTAAGTCTGAAGCAGGACAACCTTCAGGCTACCCACCTCTCCCCCAAAAGATGATGTCTGATGGGGATGAGGCATTTAGTATACATTTGTTGAATGACCTAATGACTTTCTCGAGGCAAATCTAAGATTCTATCTCTCTTTCTCTGAGTTGGAAATGTCAGGTGATGAGTAGGAAAGTTATAAACAAAAAGTTAAGTTCCTGACAAGAAGAATACCTAACACACACGGGCAAGCAGGGCAGCCGAGCCCAGTACCAACTTTAAGATTATCCACTGCTCATCACTAGAAGCAAGCATAACTCAGCCATGCAAAGATGGACAGCATGCCTGTGCATAACGAGATTATGATCTCCTCGAGGAAGGGCCACATCCTGAAGAAATAGGAAGGAGGGTTTGCCTGGGGTCCTGGTGAAAACTATAGGTTCATTCCTCAGCACCCTGGAGAAGAAGCATGGGGAGACACTAACAGCTGTGTCTGGTTGTCATGAAAGTCTGCCCTCTGAGACCCACTGTAGCTGCCTGGATATCATGGGGTCTCTCCTCGGTCACTGTGTCCTTTGCTTCCGCCTCTCTCACTTTTGACTTCTCTCTCTCTCTCTGTCTCTCTCCCTCTCTCTGTTGTGTTTGCCTCGTTCTTTTTTTCTCACCTCTGCAAAG
Seq C2 exon
GTAACAGACATGATGCAGAAAGCCCTCTTTGATTTCCTGAAGCACAGGTTTGATGGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007666:ENSRNOT00000059430:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.111 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0062516=Guanylate_kin=PU(8.3=55.6)
A:
NA
C2:
PF0062516=Guanylate_kin=FE(10.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]