DreINT0040190 @ danRer10
Intron Retention
Gene
ENSDARG00000009738 | cacnb4a
Description
calcium channel, voltage-dependent, beta 4a subunit [Source:ZFIN;Acc:ZDB-GENE-080320-2]
Coordinates
chr9:38308586-38311020:+
Coord C1 exon
chr9:38308586-38308666
Coord A exon
chr9:38308667-38310961
Coord C2 exon
chr9:38310962-38311020
Length
2295 bp
Sequences
Splice sites
5' ss Seq
GAGGTAGGC
5' ss Score
8.99
3' ss Seq
ATTGTGTTTTTTTCACACAGGTG
3' ss Score
9.98
Exon sequences
Seq C1 exon
GCTGAGCACATTCCTCCATATGATGTGGTTCCTTCCATGAGGCCGGTGGTGCTAGTTGGCCCATCACTAAAGGGATACGAG
Seq A exon
GTAGGCCTCCCCCATTCCCTATGGTGTGTGAATGTATGTGTGTATATTTAGACATGGTAACCAGGGCATCTCTTCTTAAGCAGCGAGTGAAAGGGGATGTCGGTTTGTCACTGAATAGCAGTCATCATCTCCGAGCAGAGTTGCCAAGGCAACAACCTTCTGGGTACAACATGCCAGTCTCAAAAAAATAAAGCACGGTTTGAAATTAGAAACAGAGGGGAAAAACATAACCACCATCTCAAAAATCAGCGTGACAAGTGTGTTAGCATGCACCATCTGAATACTAGAGGCTAAATCTCAAGGCATGCCCTTTGGAGTGTATATCAGGATTGATCAGCGGAAGCTAAACGCTCATGTTTAAATATTTAAAGGGCTCCTGTTATGCCTTTCAGATATTACCTGCTTTGTGAATGTAAGAGCCTGTTTTCACCTGCTATTAAGATGTGTTTTGGGGGTTTGAATCCCAATTGGACAAGGGAGATAGATATACACTCCCATTTACAACTGATGTTCAAATCTATACACTTTCAACCACTTCTCTTATGACGAAGGGGCTATGGGTGAATGCATATGACTCAGAATTGCGGGTACATTCCAAGCATTTTTTTCTAAATTGGAAAGACATTGTATAATTTATAGTAAACTGAATCTATTATTAGTGTAAAATAATGCAAAATGCTTAAATGTTAAAGGGAATGTTTGATTTCTTTTTACAAATTGTTGTTTAACTTATTGTTAAACCTTTTAAAGCTAATGATAATGGAGTAGACAGTAGCAAAGTTTACGATAGCAAAGTTGATGATAACAACGTTGACGATAATTTAGTTGACAATAACTGAGTACATGATAACAGAGTAGACAATAACAGTATTGACGATAATGGAGGTGACAGTAAAGGAGTTGACAATAACCGAGTTGATGATAACAGAGTTAACGATAATAGAGTTGGCGATAATGGAGTTGACAATAAGGCAGTAGACAATAACAGTATTGATGTATAGTAGTATACGATAACAGAATTGACGATAACAGAGTTGAAGATAACGGAGTTGAATATAAAGGAGTAGACGATAACGGGTGAGACAATAACATTATTAACGTAAAAGGAGTACATGTTAATAGAATTGACAAAAAACGGAGTTGATGATAATGGAGTTGACGATAAGGTAGTAGACAATAACAAAGTAGAGTCGATAACAGATTTGATGATAAGGTAGTAGATAATAATGGAGTAGACAATAATGAAGTAGACGATAATGGAGTAGACAATCACATAACTGACGATAATGGAGTAGACGAGAACAGAGTAGGCGATCACATAATTGACGATAACAGAGTAGATGATAACGGAGTAGATGTTAATGGAGTAGAGGATAACAGTATTGACGTAAGTGAGTAGACGGTAACAGAATCTTCCAGAACAGAGTTGACGATAACAGAGTTGACAATAACATAGTTGACAACAGAATTGATGATAACGTACTTGACAGTAACGGAGTTGACGGTAATGGAGTTGACGATAATGGAGTTGACGATAATGGAGTTGATCGTAATGGAGTTGGCGTTAACAGAATTGACGATAATGGAGTTGACGATAAAGGAGTTGACGAGAACAGAGTTGACGATAACGGAGTTGACAATAACGGATTTGATGATAATAGAATTGATAGAAACGGAGTTGAAGATAACAGATTTGATGAAAACAGAATTGACGTCAATGAAGTTGATGATAACGGAGATGATGATAACAGAATTGAGGGTAATGGAATTGACAATATTGGAGTTGCCAATAACGGAGTTGACAATAACAGAGTTGACGATATCTGAGTTGACGATAACAAAGTAGATGATAACAGAATTGACAATAACTGAGTTGACGATAACAGAGTAGACGATAACAGAGTTGATGATAACAGAGTTAATGATAACGGAGTTGACGATAACAGAGTAGATGATAACAGAGTAGATGATAGCAGAGTAGATGATAACAGAGTTGATGATAACGGAGTTAATGATAACGGAGTTGACGATAACAGAGTAGATGATAACAGAGTAGATGATAGCAGAGTTGATGATAACGGAGTTGATGATAACGGAGTTGACGATAACAGAGTAGATGATAACGGAGTTTGATTGAGCTCATTACGCACACATATGTCAACTGGTACTTTCCTGCAAATATTAAGACAGAACATACATTATTGTTGAATTAAACACTGTTGAATTAAATGAAATATTTCCTTCTGTTTCTCAATCATTCTTTCCAATAAAAACAATTGTGTTTTTTTCACACAG
Seq C2 exon
GTGACAGATATGATGCAGAAAGCCCTCTTTGACTTTCTGAAACACAGGTTTGAAGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000009738:ENSDART00000123749:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.037 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0062516=Guanylate_kin=PU(8.3=55.6)
A:
NA
C2:
PF0062516=Guanylate_kin=FE(10.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]