GgaINT0045680 @ galGal4
Intron Retention
Gene
ENSGALG00000012511 | CACNB4
Description
voltage-dependent L-type calcium channel subunit beta-4 isoform c [Source:RefSeq peptide;Acc:NP_989675]
Coordinates
chr7:34846163-34848077:-
Coord C1 exon
chr7:34847997-34848077
Coord A exon
chr7:34846222-34847996
Coord C2 exon
chr7:34846163-34846221
Length
1775 bp
Sequences
Splice sites
5' ss Seq
GAGGTACGT
5' ss Score
10.2
3' ss Seq
TCTTCCTCACCTCTGCGAAGGTG
3' ss Score
5.98
Exon sequences
Seq C1 exon
ACAGAACACGTTCCCCCGTACGACGTGGTGCCCTCAATGAGGCCCGTTGTCTTGGTGGGGCCGTCGCTGAAAGGCTATGAG
Seq A exon
GTACGTACCCCAGTGCTTGCAGTGAGGCCCCATTTTCTTGCCCGTGGTTTCCCTTGGTCCATTTGGTGTGTTGGCTGATTAGCCAACCAGGCATCTGTACACATACAGTTTTAGTCAAACTAGCACATGCTTTGAGCTGAAGTAGTCCAAATTTAGAATGTCCCCTGTAAGGTAATCCTCATGTTTTCACTTGTGAAAACTTCACGTCTTCCCACGAAGCTCAATGCTGGCCAGTGAAGTAGCTGGGCTGTGGTAGCACATCCATGTCTGTTCTCCAGCACCTGAAACCCAATGTGGGGACTGATGACTGTCATTTCAGTGTGTTTCCTTCACGTTTGTTTTTTCAAGAACATTGCAGTATCGAAATATGAGGAAACCTTTAGCCCTTCTAAATTATTTGCCTCTCTGCAACACGGAGGTGGGTGTGATAACAGGTACAGATAAACAGGGGACCCATTTGTCAAGGTTGCTGCACGTTCAAAAGAGCATTTAGCACATGCTGAACGACCAGAGGCTTTTAGCAGGGCCTGTCGGTGAACTTATCCATCTGTTAAGTGTTTTGCCAAATTGAGATCTAAATTAACATGAACATAAAATCAAGGATACGCTTCATTTAGCTTAATTAATGCTGTTAGTACTTTATAGGATATTATTGAACATTGGAATGGCTCTTTTCAGAAGGTTGCACCGGGGTAATGTTAGCATAATGTGATGTTCTTACATCATTTTTTTTAGTAGGGATGATTAGAAGTGTAGTTTGCTGAAGCAGGAATGAGGTGCTTCGTCTTCATCCGCCTTTTAATTTTACGGCGGTGTTTCATGACAGAGTAAATGTCACCCATTGGTTTTGATGGTGCTGCACCACAGCTTAATTTGTCTGGGCACTCAAGTTTGGCGGGGAGAGGAGCCATGTGTTGAGTGCATATCTTTGTACAAGTATGTTCCCCCTCTTTGTGTTAGCAAATAATACTTAATCTGACATCTTGAACATACAGAGGTGCATAAATGGTGCTGCAGTTAAGGTGTTTCCATTCCAGTTTTGCTCTACACAACAGAAACACGTTGCTCTCACTTTGCGACCTGTATGGAAAAGTTCAGTGGTATTTTTTCTGGCTAAATTCTCTAAGAAGCACTTTGAAGGTAACCTGGGAGAATTAAACTGCCGGAGGCCTGGGGCTTTGGTGCAGTTCCTATCGAAGTGTCAGTAGAGTTGTACTGAAAGGAACAGTCAGGAAAGCAAACGATGTCTGCTGGGGTTGAGCATCTCTCAGATGCTCTCCCTGTTACAGGAGTGAAAACATGTTTTTTCTTCCTTGTAGGCCTCTCAGAGAATAGCTTTGCTCTTACAGCAGTCATCCAACATAACAGATCTTGTATCTGAAGTCTTAGGCCAGTAATAATAACGTTACTGGTGGGGAAAAAGCAAAGGATTTGTTCAACCTGAAGTCCCACGTGGTCCTGACATGTGCTGAGCCCTGCTGGGAATGGCGTTGCTCTGGAGGGTGGTGCGGTGTGCTCCGCTGCCTCAGAGCAGATGGAGGCAGGAGCAGTGACAGCTCTGATGTCCTTAGGGCCACATTTTGTGACTCACTCATAAAACCTGCAAGTGTTTGTTACAGAGCTGCTTCCAAGAGCATGTTAATTAAATGACTGCTACCGAGGAAAGGTATTGATTGTTGGCAGTATCCTTACCTTCTGCTTACCTCTCTGCTTACTTTTGACTTCTCTTTCTCCCTGTCATTCCTCTCTGCTCAATCTTCCTCACCTCTGCGAAG
Seq C2 exon
GTGACAGACATGATGCAGAAAGCTCTCTTTGACTTCCTGAAGCACAGGTTTGATGGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012511:ENSGALT00000020437:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.231 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0062516=Guanylate_kin=PU(8.3=55.6)
A:
NA
C2:
PF0062516=Guanylate_kin=FE(10.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]