BtaINT0030572 @ bosTau6
Intron Retention
Gene
ENSBTAG00000002297 | CACNB4
Description
calcium channel, voltage-dependent, beta 4 subunit [Source:HGNC Symbol;Acc:HGNC:1404]
Coordinates
chr2:44411868-44413292:+
Coord C1 exon
chr2:44411868-44411948
Coord A exon
chr2:44411949-44413233
Coord C2 exon
chr2:44413234-44413292
Length
1285 bp
Sequences
Splice sites
5' ss Seq
GAGGTACCG
5' ss Score
8.5
3' ss Seq
TTTCTCTCACCTCTGCAAAGGTC
3' ss Score
7.39
Exon sequences
Seq C1 exon
ACGGAGCACATCCCCCCCTACGACGTGGTGCCATCCATGCGTCCGGTGGTGCTGGTGGGGCCATCGCTGAAGGGTTATGAG
Seq A exon
GTACCGATATCAGTCTGTTACCCATTAGTTCTTGATCAAGAATCTAGGAGACAGCCACTGGGAGCTTCCTCCACTAGGGCCCTCAGCTTGTGAAGACAGGAGGTGCTTTGTGGGGTTCACGTGGCCCTTTGCTATTTCCTCCCTCTCTGGCCCTCTTCTCATCTTTCATGTATTACAGTGTTTAGAAATAGCTCCCTCAAAATAGTTATAATGGGAAGTTCTGGTCAAAGGTTTGCTCTGCTTTCAAGTCAAAGAAAAGGATTTTATCTGTCTCAACGGTTCCTGTTGCTGTTAGAAAAAATAGCAAATGAATGGCACAAGGGAACATAAAAGCAAACTGCCAGCAAACCTCACCTCAGAGCACCAACCAGTCTCGCTTTGCTGGGTGCTCAAGACGATGGCATATTCCACCAAACATTTCCCTGCTTCTTTATTTTAAAGGACATAAAAAAGGGAAAAAACTCCATTAAAAATATCATTGAACTCCTTCAGAGATGAACTAAGCAATGTAAGGAAGAAGAGAGCACTTAGATGTACTGCATTTCAGATGTTGCCATTTTGACTTTATGCCAGCATGGATAAGAATAAATGGGTAGGACATTATCTGAAGGTGGGCCACCTCCATGGCACCCTTCCCACTGAATCAGCACAAATCTGGCACATAGTCAGCTTTCAGTGCACATTTGTTGACTGAATTAATCAATCTCTTTGACGCAGGTTTAAGAATCCCATCTCCTTCTCCCACTTCCCCTTTCACTCCCTCCCCTCCCCTCCCCCTCTCAATGGGGACTGTCTGAGGAAGAGCAGAGAGGGGTCTACAGAAGTCCAGCCCTGGATGTGGAGAATGTGTCCACCAACTTGCTCGGACTAGCAGGAGGCCGGGCCTGGGGCTGGCCCAAGGAGCTCTAGTTGCTCCTCACTACAGGCAGGCACCACTCAGGTATGGCATGGACAGGCCGTACCTGTGCACAGAGCCAGCTTATCCTGGTCTCCTGGTGGCCATTCAACCCCTAAAAAAGAGATGAGGGTCTGTCTTGGGTCTAGTGAACACCGCTGGTTCACCCCTCAGCACCCTGGAGGAGAACAAATGGGGGAAACTGAGTAAGCGCAAGTAGGTTAAGTGTGAAAAACTCCATTCATGGTAGTTTGCCCTGTCCTGCGCCCAGCAGACAAATAGCTGTGATAAGGTCTTTGGTTGGAGCACCCTTCTTTGCAGCTCTCTCACTCTTGATCTCTCTCTCTCTGCTGTTGTTTGCCTCATTCTTTTTCTCTCACCTCTGCAAAG
Seq C2 exon
GTCACAGACATGATGCAGAAAGCCCTCTTTGATTTCCTGAAGCACAGGTTTGATGGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002297:ENSBTAT00000002971:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.111 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0062516=Guanylate_kin=PU(8.3=55.6)
A:
NA
C2:
PF0062516=Guanylate_kin=FE(10.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]