RnoINT0028264 @ rn6
Intron Retention
Gene
ENSRNOG00000007666 | Cacnb4
Description
calcium voltage-gated channel auxiliary subunit beta 4 [Source:RGD Symbol;Acc:68385]
Coordinates
chr3:37978523-37987334:-
Coord C1 exon
chr3:37987276-37987334
Coord A exon
chr3:37978633-37987275
Coord C2 exon
chr3:37978523-37978632
Length
8643 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGA
5' ss Score
7.66
3' ss Seq
TTCTGTGTTCCTCTTCCTAGGAT
3' ss Score
11.66
Exon sequences
Seq C1 exon
GTAACAGACATGATGCAGAAAGCCCTCTTTGATTTCCTGAAGCACAGGTTTGATGGGAG
Seq A exon
GTGAGACATACAGATGTTTTTGTCTTTTGCTTTCTTCCCCTTAACTGAACAAGTGTGATAAACTGATTCGTGGATCTGTGTCCAACCATTTCAGAAGTCTAGTAATTACACTGGACTCAATGTTCTGGGAGAATATACACTGGGACAGCTATGAAAATATGAAATTATACTGAGGCCCCCAAGGACAGAAGGGCCTGGAAAGGGAAATTAATCCATTTGTTGGGTATAATACATATTTGTGTTTATTTTCTCCCTTACTGGTGATTTCATACCAAACTGGTTTTCATGAAGAAATTGGTTAAAATGTTTGTTTCTGATGAGTGTAATGGCTCACTAGTCATATTGGGTAGTGTCTGGAAACTGGGCATGTGTGCAAATGCATGTATTATGTACGTGTGATTCGAAGGTCTAATATATATACATATATATATAATATATATGCTTTGTATATAATACATATATGTGAATTATATATGTATATATATATGTATTATATACAAATAACAAGGGAGCAGCAGTCATCACTTGGACATAAGCTTCAGCGTCACTATTGAAGGAAACCACTTATTTGCACATATGTTTAGAAATAACTTTGTTATGTTTTTTTAGGTATGTTTTGTACATATCCCACTACAAGCCATTATCAATATGAGCCCTCAGATTCTGAGCTTCAGTTCTGTGGAAAGCATCTAGAGCTCTTAGGTTTTCTAGGGAAGTGAGGGAGATCTGTATTGACTTAACAATGAGAGCATGCTTATCCTCAATGTGTGGTCTGTGCAGAGACAGCCACAGGGAGAAAAAAAAAACCTGAACTTTGTCAGAAGTGAATTTATATAGTGCACATTGAGAAACCTCAAGAATGTGTCCAGGTTATCACTTTAAACTGAATAGTTCCTTTTAAAACTCTTTAAATACTTTGAAATAGATTTTAGAGTTTAATTAATGCAGCATTTAAAGAAAAGGCAAAGTGATCATGCCTCAAGCACAAATCATGTATAGATAAAACTTAAGTAAAAATATGTGTAATTTCATACAAATATGTATATGCATTATAATTTGTCAAATAAAAGCCTTCTATGTGGTCATGTGAAGATAATCATTGTATCTAAGACTAGATACAATATAAAAAAAAACTGAGGGGATGGGTGGGGCGGTGATGAGAGTGCTTGTGTACAAACAGAGAGCCTGAGTTCAGACGATCAGCACTCACAGAAAAACCAGCATTGACTCTCATGGGCCGGCAAACTCACTGCTATGTAGGAAGGGATGAAAAACCACAGGAGGGCTTGCTGGCACTGGGTTAGGAAAGACTGTTTCAAATAAATAGGGTGGAGAAGAGCAGATTGGGATTCCCAGTGTCTTCTATTGTGGACACCTGAGCACAACACACACATACACATACCATATACAATACGTACATACAACACACACACACACCACATATACACTTACACACGTGCACACATATATACACACACATACAACACATATACACACAATGTACACACAGCACATACACATACATACATACATACCACATATACACTTAAACACATGCACACACATATACACACATACAACACATATACACACAATGCATACATACAACACACACACACCACGTATACACTTACACACATACACACACACAACACAACACACACATACAACATATACACACAATGCATATACAGCACACACACATATACACAACACATGCACACACACACACACACACACACACACACACAGCTATGATTTTTTACTTCCAGTAATTGAGAATTGCATTGAAGAAATGGGGACTATTGTCTGCCCTTAGGTGGATTTCTAAGTATATGACTGAATTTAGGATAGGTCACCTTACTGATAGACCCCCCAGATGCATAATGACTTGAACACACTGGAAGCTTGATTTTACTCACTAAGTGATCGGAGTCAGGGATTCCTGCTGGAGAAGAACAGGTAAGTGGTGAGGGGAAGCTCAGGCAGAACATTTGCTTCACCTACCATTTGGGGCCCTTGGCCTTTGACCTCAGTTCTCCAGTTAGCTAAAAGGGAAGGGGCCTCTAGGGCCTGCAAATAGTGCCCATAAAAGCTCCTTTCATTGGCTAGAACTGTGCTGTGTTCTTAGCTGTGAAGGAGAGTGGTAAGTGCCATGTAGCTGTATACCTCAGATGTAGAGAAAACAGAGCTTGCCATAGTCTGGTGAGCACAGAATGTTGATTAAAGGGGGAAGGCATGGTTATAGTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCTCTCTCTCTCTCAAGACAGGTAGAAAAATGAGCTATCTTGGAGGAAACAAGAGGAACACAATGAATATTAGAGTCTTGGCAGAGGAAACATGAGTTCTTCAATTCTAATCTCTCCTCCAATCACTACCCTCAGATAGACAGCCAACCCTCTTCTGTATAGAAGGCTCTGGCTACTAGGGAACTCATGTCCTAAAAATGTATTACAAAGAAACAGCTAGACCTAGACTCTAACTTACAGTAATGGTCTATGTCCTGTCCTGTGGTGTTCTGGGCCATAGCTCTCACCCACAAGTGCCTCTGGGGATGGAAGGCAGCTAACATGAGAGGCCATGTCTGCTCTTCTAGGTTGCATGTGCCTAGTCCTTTCAGCTCTGTGTGGACGCGTTGGTTTTCACCTCGGGTGCCGTCACTTTTCAGAGCAGTGCCCCCACCCCCTCTAATACCATCACAGCCCTCGATGGGAACAAATTCCTAACTCGGCCTATGCTTGTGTTAGATTGTTTTGGTTCCCCATGACATTCCTACAAATGATGTTGTTAAAGGTTGAAAATAGCATTGGTGAGAGCAAGCAACTACTTCCAAATATTTGGCCAAGGGGAAAGAGCTGAATGGCTCAGTTGCTGTGTCAGTGAGTACAGATGCTGTTCTTAATCCCGAGGCCATGCAAAAGGTTGTTCATTTCGTTGCAGCACAGGCTAGTCCCGAGTCAAGTAGAATTCTCCCGCCATGGTCACTGTATCTACACTGTAGAAGCTTTGTTCATATTAAAGATAGAATTAAAATTTCAATGCCAAGTTTTTATGAGGTCTGATGATGCAGAGAATCTGGGGGCAGTGAGATCTGGAAGCAGCTAGAGCGGCAGCTGGAGACAGAGGCAGGCCTGGAAGAGTCTGGTGCATAGGCAAGGCTAGAGAGAAATGGTTAGTAAAGATGGGGAGTTGGGGGCACTGAGCTTGCTTTCAGGTAACGAGAAGAAGACAGTACTGAAGAAAATCCCCATGAGCCCACTGCAGAGTGAATGGATGGTTGGATAAGGGAGAAGTTGGCTGGGAGCTCCTCATAGACACTAGCACGTCTTCTGTGTGGGGAATACTGTGTTTTGACAATCTGCTGTGTGGTGTTTTTTACCAATTAATAAAATGAGGGAAAACAGCGCATAGCCTTGAGTTGTGATCAGCCGAGGAAGGCGTTGACACGGCGAAGCAGCACAAACAGCACGGTCAACAGGAGCCTGCTCAGAGCTTCTTCGGCTGTGACTATGGTATGGTAGACCTCACAGACAGAGAGTGCCCTGTGGTTTTCAGAAAGAGCAAATTGGAGACCCATGGGTTAGGGGGATTTCCTGCTCAACACTGCTTTTGAGACCCCCATTCAAAGTCAATGCAGCGGAGTAGACAAAACCCATCGGCTTGATTGCAGCAAGCAAAAGCCGGGATGACTTGTCCTTTCATTCTTTGGAAATGTGTCACTTTAGGCCTGTGCCTTACTCAATTCGAGTCTAACTGTAATGCACATAAGGAAAAATGAAAAATGCAGGACCGTGTGGCTCCTGAGGAACCCAAGAGTGATTCCTGTGAAGGGACTCGGTGGCACTCAGCCTTTGAGGGACACAGTAGGCACAGACAGAGTGTCCCGACTTCACACCACAAGAACTACCTGGGCTCATCTTCACCAGTGAAGTTTGTACAACTGCACAGCCCAGCACTGACAGGCTGAGCAAGCCCCTCACCAGCCACAGTTTGCTGACTTACACCACATGTTTCAAATCCCCAAGAGTTGTCATCTAGGCTTTAAATTTTTTATTTTATTTATTATTAATTAATCAACTGAATTTTAATTAATAATTATATTATTAATTTTATTTTTACTAGCACGTATTCGGTGTGCGATCTTTTAGACAATTAGGTAGCATCATGTTATGTCCTGAAATCATGCATGAATCCTGTGAAGCCTACAAGGATAGACAGAGTCCTAAAGAAATGGGAATTATGCTCAACACGCAAACTGAAAGGAACGAACAAAACAACCCAAAACGTTAAAGTGGAAGACAATTTGTAAGAGAAGAATTTAAGCATACAACCTAGAGAGGTGCTAAAACTCAGTACAGAGTTTATTAATGGAAGTCAACTGATGGCATCACAAAGCAGCTGCACCACGTAAATGAAAACCGTTTGCCATTGCAGTTCACAAATGGCCAAAGAAGCGTCTATCTTATAACCAGCATCCCCTTCCACACAGCTCCGACCACAATTCTCTCTTCTTGTGCTGGCTTCAAACACTAGAAATAACTAAACATTTTTGGGCCAACTCGAATGCCTAAATTACTTCATATCTCACTGCATTTCACACTGTTTTCTCTATATATGGGTTTCACCAGGTCTGGGATGGGAGAGTTCATGGTGGTGGACTGTAAACTTAGGAAGATAAGATACAAGGAAATTGTTCCCCTTGAGGCCTTGGAGGTCTTACAACTGTTTTCCTTATATACATTTATACATACACACATACATACATACATACATACATACATACATACATACATACACACATGCATGCACACATGCACACATATATCACCAAGGCAGCTTCTACTTACTTACTTATTTATCTGTTTTTGTTGAGACAGTGTCTCATTGTGTAGCCTTGAATAGCCTGGAACTTGCTGTGTAGACCAGGGTGGTGTGGATCTCCCAGAGAACCACCTGCCCCTGTCTTCCAAGTGCTGGGATTAAAGGTATGCACCGTCACATCCAGTCCTCTGAGGCAACTTATAGAAGGAAGGGTACTTGGGGCTTACAGTTTCGGAGTCCATCACAGTCACAGAGGGGAAGCATTGCAACAGGCAGACTTGGTGACTGGAGCTGGGCACTGAGAGCTGACATCTTGATCATAAAAGTAAGAAACGAAAAGAGCGAACTGGTAATGACATATAGCTTTTGAAACCTCAAAGTAGCTTCCAGTGATGGACTTTCTCCAGGAAGGCCATGCCTCCTAAGCCTCCCCAAGCAGTGACACCGACTAGGTAGTCAAATATCTGAGAATGTGGGGGACATCCTAAACCACCACAAATGCTAAGAACAATCACTCAAGAAACTGGTTTTATAAAGCGCCTTCATCTCCCACAGCGATAATCCTCTGAGATACTAATGACAAGTCTGACACCTTTTTATTGATTAGGGGATGAGTCTCAAACATGCTGTAATTTGGCCTTGAGCATGAAAATCAAAAGAAAGATAGAGGGGACCCTGGGTCTCCCTCAACACCCTGTTCAGACAGCTTTGGAACACTTTTCCATGTGAGCACTAGGGATTTAAAAACATGTGTTATACTATGTGGGAATACTAATTAGAGGTGAATGGCTGTGTCATAACTGAAAGAGATATCTTCCTGTAGGAAATGTGGAGGGGCAGATGAAATAGCTCTGCAGATAAGGACTCCTGCCGCCAAGGCTGGCGTCCTGTGCTAGAGGCCTGCAGCAGGCCGGGTGCAGACTTGCTGGATTTACAGAATGGTTTCGCTGGCTTTCAGGGACGTTAGCTGCTACACCCCATCTTCAGGGTAACTGAACTCCTGCTGTCCCACAGCTACAGACACTGCCTCAATGAGACTGCCAAGGGAAGTCTTTGAAGGTTTCGAGCTGCACCGGTGTGCTAGAGGACCAGGTGGATGTAAAACCTTTGCTGAGATGATTTTTATTTAAAAAGAAAGAAACTAGGGTCTGCTCTCTGGCCCTGACAATAGTAAGCCATTCAAGAGTAAAAACCTTGGTCTTAATACTAGGCATCCAGGCAGAGTCTGCTCCTTCCTGGACCCTACGTCATGCATGTGCATTTTGCTACCAGACAATATATATTATTAATGGAGTCTTTTTCATTAGAAAATAAAATGAGAAAAGGGGCATTCTGCCACCCACATTGTTCCCTCCATTTTTAACTGTCAAAGCAGCTGTTTCCCTATACATTAAGGTCAGGAGAGCTTGGATAGCTTTGTAAAGAAGCTTTAGAACCCAGGGAAAGCCTAAGAATACACATTTGTTCATGATTTCCTCAAAAAATTTAAAAAACCAGGAGTTACGGTTTGGCTTACGTAGAACTAGAAAATCTTGGCACCGCAAAAATTATTCTGGAAAATCTGAATTCTGCCTCAATTCATCCCACTTATCTACAGCCACATACTTGGTTGTTCTAGAATATGAAATGTGAAATATGCTTCTATTCAGATGCTCCACTCTGTAACAAACAGGAAAGCTAGAGCCCCAAATTAAACAACATGAGTCCTGCCTGGGGGAGATTACCATTTCAGAACTGCGTGAGCAGGCATGGCAGCCACAACCTGTAGTCCCAGCGTTCAGGAGGCGAAGGCAGAGGGAGTCCAGCAAGTATGAGGTCAGCCTGGGCTACAGAATGAGACTCTGGGAAGGAAGGAAGGAAGGAAGGTAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGGAAAGGAAGGGAAGGAAGGAAGGAAGGAAGGGAGAGAAGGAGGGAGGGAGGGAGGGTGGAACAGAGGGTAAGAGGGAGGGGGAGAGAGAGAGAGGGAAGGAGGGAAGCAGAAAAAGGCAGTAGTAGAAACTGACATACGTGACTCACTTGATTCAAATCCAGTTTGAACCCTCACAATGCTCTCAGCTGGGTGAGGGTTGTAAACCTGCATCTTAGAGAGTTGTTACTGCAAACAAAACTGAACCAGAAGAGAATCGTGCAGCTAGGTGAGCCAGCCTCTTCCTACGAGAGCCTCTCGAGAGCCTCACTGCCTGGAATGAAGCGAGTTTTCTCCGTTCTCAGTTTCCCTCTTAGTAGAAGGTAGAAGTTACTCATCAGGGTTTTCAGATGTCATGTCGAACTTTTCTTTCCCTCCTTTCCTCTTTACTTTCTTTCTCTTTCACAAAACAATGAACTCGTGAGTGGGCCCCCTGGAGAAGACAGAAATTCAGAGGTGTACGGTTCCGCTCATGTTGACGCTCACAGTGGTCCGGGGAAATCTCCTCGCAGCTTTCAGTTTCTGCGCAGGATAATTTGAGTCTGCCTTAAATAATTATCAAGGCATAACAGTTCAAAAAGTTAAAACACTGCTGTGTTCCAAGCACCTGCAGCTTATAAATGCAGCCACCCAGGCCAGCACCACTTGGCTTCAGAACCCCTAGAACTTCGGCACTTTCTATAGCTTGGACGCAGTGGTGGTTACCCTTGGTTCCAGGACAAGGAAGGCTGAGACAGGAGGATTATGAATTCAAAGTTATGCAGATACATATTGTGAGACTCTATCTCAAAAAATTTTTGTTTGTTTGCTTCCAAGCATTTATGGAAAGGACAATTTTAGGTTCTTCCCAAGGCTTCTAGTCACCAGAGTCTCCAGTTGGCATTAAAATGGCCGGAAACAGGAGGAGTGAAAAGACATACAATTAAATACATGCTTGCTTCTCTGCTCTAACCCTCAAAGAAGTTCAGCCCTGGAGAAGAATAAGTCTGCTATGAGGATAAAGGGAAGCGATCCTCCCCTTTCTGACTCAGCCATGATGATGTGCGGATGAGGGTAGGGAAGGTCTCTCTAATTGTCCTAGGTGGACCAGCTTTGAATTCTACAGACAATAGCTGGAAGCTTAGCGGTCTCAATTAAAAATTATTTTAAAATGATAAAAATTTACATGCTATTGCTTGATAATGTGTATTTCAGTTGTTCCCCTCTCTCCATACAAAGTCTCAGCTCTGGTCTTCCGTGATGGCAAGGTGTGTTCTCACTTAACACAACTCCAGTCTCATGCTCACATTGACTTCAGGTATTGGGGTTGAAATACTTCATATATCAGAGATTAACTACTGAGCCAAGAAACACAACTTAGTTACCAACTGGTTGATTTTTTTTTTCTGTGATCAAATGAAGCTTTCCCTTTCCAGCTAGTGGTGTTGGGGTAGAGCAGTTGTGTATCCTGAAGGTCTCATTCAAGAGCAAATCAACTGTTAATTTTGAGGAAATGAAATGGTACAGCTATTTCCTGGAAAGAGCATGCTTAATTCATGTTTTGATCCCGTCCTGGTGTGCTGCATTCTTTAAAGGCGACTTGGCCAGGCCATAATGGAGGGAGCACATTTTCACTGGAGTGGTTTTTCAGCTACAGAGCCAAAGACTGCCACCATTCATGGTTTGTATTTTAATATGAGCCAGAGTCTGTTTAAAATCCTTGTGGCCGATGTTTACTGTACGATGGTTCCATGGTAGTGTGTGGAGTGTCTACTAAGCGCTGCAGCTATGAGTCACTCAGACAGCCACATTTTTACTGGCTTGTTCTGTTCTGTGTTCCTCTTCCTAG
Seq C2 exon
GATATCAATAACCAGAGTGACAGCTGACATTTCTCTTGCTAAGAGGTCTGTCCTCAACAATCCTAGCAAGAGAGCAATAATTGAACGTTCAAACACCAGATCCAGCCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007666:ENSRNOT00000059430:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.158
Domain overlap (PFAM):
C1:
PF0062516=Guanylate_kin=FE(10.5=100)
A:
NA
C2:
PF0062516=Guanylate_kin=FE(20.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]