GgaINT0045681 @ galGal4
Intron Retention
Gene
ENSGALG00000012511 | CACNB4
Description
voltage-dependent L-type calcium channel subunit beta-4 isoform c [Source:RefSeq peptide;Acc:NP_989675]
Coordinates
chr7:34843368-34846221:-
Coord C1 exon
chr7:34846163-34846221
Coord A exon
chr7:34843478-34846162
Coord C2 exon
chr7:34843368-34843477
Length
2685 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGA
5' ss Score
7.66
3' ss Seq
TTTTGTGTTCTTGCTCGTAGGAT
3' ss Score
10.91
Exon sequences
Seq C1 exon
GTGACAGACATGATGCAGAAAGCTCTCTTTGACTTCCTGAAGCACAGGTTTGATGGGAG
Seq A exon
GTGAGAAATGCTGTCCTTTCCATGCTTTTTTCCATGTATTACTAGCGTTTCAGTGATGTTTTGTAATGAAAGGAGACCCATGCATGTTCCGAACTGATTTATAGCATCAGCAGTGAAGTGCAGCCAGCTGTGGGCTGGAGCACAGCTGATGTATCACTAGACGTGCATGTGTCTTTGTGTCTGCTATGTCCGTGGTAGGGTTTCTTCATTTAAGTGAATCATTTTGCCTCAGTGTCTCATAAGAGTGGAGCTGTGGGAGATGAAAGGTGACTGTGGCACGTGGGAAGTGCCAGGATAGCTTTGAAGGCGGCATTTCCAGGCTTGGGTATTCAGCATTGCAGTGGGAAGCATGCAGTGCTGATACAGCTGGGAGTGTTGGGGAGCAGTGCCAACCTGTGATTAAGTCTTTGGGCAGAGCCCAGCTCCTGGTTTGCTTCTGTGTAGTTCCAGGCTCCTGTACAGCAGGATGCACTCTAAATAATACTACTTGCACCCAGGCCCTGCAAGTACCATGTTGAAATGTGCAGAAGCAGCCCAATCGACTGAAGGTGGTGACGATGCTTCAGGCCACTATCTACAAGAATTGAATTCTTGACTATTGTTAGTAATCAGAAATAATTAAAGCTTGAAGTGGGAAATGCTGAGCACTGAGATACACAAAAAGGTTTATAACTTCAGCTGGAGCAAGAAGAATATTTCCTGAAGAGCTGTGATGGGGAACAAGCATGTGTATTTCCTTGTTAGGAGGAGAGGGTCGGCCCACAGTGTCCCTTCCTCACCCCTGGAGCTCACCCATGGTTGCAGATCTGTGCTCTGCCATTGGGATGTTTGACCCTTCTTTCACCGTAGCGTGTTCAGCATGTTGTACCTGCATAGCGAGGTGCTTGTGCTGCTCGAGTTTAGCTGCACTAGGTTTGTGACAGTGAGGAAGCCTAAAACGTTGGCACTAAGATGATGAAAAGAGGTTTCTGTCGTTCAGAAGAGGTGGAATAGGATTTATGTTCAAAGCACCTTTTGGGGTGCAGCACAGAGGTGGTGATGCTGAAATAACTCACAGGCAGCTCAAACAAAGCATTTAATAATCAAGCTTTGTGCGGGATATTTCTTCCCTGTTTCTAATAGCCCAGCTGAAGTGCTTTTAGCACGTTCCACAAGCACAGCGATCGATTCCAAGTCTGACAGTTGAAGCAGTGACTGTGGCAGCCCGCAGTTCTGTTTGCTGTGTTTCTGTTGCACGCTGTCAGGACGGCCTCTCCCACTCCTGAGCAGTTTGACTGATGTGGCTTCTCTGCAGCTCAGCACAGGAGCTCTGGTGCACGTTCCCATCAGGGTAGATGCAGAACCGCCGTGCATGCCCCCTCCAGCTGCTGCCATGCACCTGTCAGATTGCAGTGTGCCTCCGGTAACTGACAGTCATTGCTTTTGGTGGGAAACCATGGCAACAGGATGCCATAAGTCATCTCGAGTCACCAGGGCATGACTGCTCTGCAGCGTCGTCTTAAACCATATATGAGAGCGTGCTCAGCAGAGGCTGACCCACATGGCTCAGCAGTGCCCTGGTGTGGGAGACGAAGATGCAGTGCTGCCCAGCAGTGCTGCTGAGGGGAACAGCACCTTGCCTTGTGCTGCTGTGTTCTCACTGCTCTCCTGCCCGGAGCGAGGTAGTGCTCCGGGCAGGAGCAGAGGGAAGTCTTCCTGCTGTGAGCCATGTTGGCAACTAAATTAGGCAGACACGTGGCATTTCAGCTCTGAAATTCAGTGCTACATACAAGCTGATATGATTGACTTTAAATTTGAATCAGTTAAGAAAAATCAACAAAACTCATTCTTGGGAGCCTCAGCTGCTGCTTGCTTCTCCTGTCTTATGTTGTGTGCAGTGGCTGCTGGTCATTTCCAGCCTGTTTTCTTCTCGTTACTTGTGGCTCTTTAGCTCATCTCAGTCCTTCTCACTGGATTTCACAGGAGGCAATTGTGTGCTCTTTGTTTTATAATCTGATTAAAGAGCAAACTTTCAGTTATAGGTAAATAGCAGTGCCCTGTTCTGCAGCCTGAACGCTCACACACAAGGCATGGGAGGGCACGTGCTGCTGCTGTCTGCTGTCAGCTCACTGACAGACCAGCACAACACCACCATCCCTAGGTTAGAAGGAAGCCTTCAGCAGCGCACTGCCTGTGGCTCACCTCATTTTTCTCCTATCTGACCTTAAGCCGAGTCCCTGAGTCCACTGCACAGCCCTGGCTGGACAAGGAGCTGTGTGCTGGAGGTCTCCCAGAGCTGGCAGCTCCATTTGGTGACTCAGACATGAGTGGCAGAGTCCAAATAAGGCCCTTCCCTACCTGCTGGCAGTGCCAGCTTTGGTTACACCACCTGGGAGGAGTGCTGCTGTGCCTGCTGTGCTCTGTGCCCTGAGACTTGCTTTAGCTTGTGATAGTGGGGTGTTGTATAAATCCATGTGGGCGGTGGGATGGGGAGACGTGAGCTGATGAAGCAGAAAAGCAGGAGCTGTGTGAAGGGTCTGCAGTAGCAAATAACTGTACAGTTACTCAGCATTTCTCTTTAGCTGTTCTTTACTGCAATGAGTAGTGTTTTATTGGATTTGCACTTTGGAATGAAATGTGGCTGTAAATCATGCGTGGCACAGGGAAAAAGTAACGGCTGGTTTTGTTTTGTGTTCTTGCTCGTAG
Seq C2 exon
GATATCAATAACCCGAGTGACAGCCGACATTTCTCTTGCTAAGAGGTCTGTTCTGAATAACCCAAGCAAGAGGGCAATAATTGAACGGTCAAACACACGATCCAGTTTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012511:ENSGALT00000020437:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.177
Domain overlap (PFAM):
C1:
PF0062516=Guanylate_kin=FE(10.5=100)
A:
NA
C2:
PF0062516=Guanylate_kin=FE(20.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]