DreEX6079455 @ danRer10
Exon Skipping
Gene
ENSDARG00000001881 | cacnb3a
Description
calcium channel, voltage-dependent, beta 3a [Source:ZFIN;Acc:ZDB-GENE-060221-2]
Coordinates
chr23:14400544-14402800:+
Coord C1 exon
chr23:14400544-14400624
Coord A exon
chr23:14400713-14400771
Coord C2 exon
chr23:14402700-14402800
Length
59 bp
Sequences
Splice sites
3' ss Seq
CGTGTCATGTCTGTTGACAGGTG
3' ss Score
9.74
5' ss Seq
ACGGTGAGT
5' ss Score
11.45
Exon sequences
Seq C1 exon
ACTGAACACATTCCTCCATATGATGTGGTGCCATCCATGAGGCCTGTGGTTCTGGTAGGACCGTCACTAAAGGGATATGAG
Seq A exon
GTGACAGACATGATGCAGAAAGCTCTGTTTGACTTTCTCAAACATCGCTTTGATGGACG
Seq C2 exon
GATTTCAATAACCCGAGTAACTGCTGACCTTTCACTGGCCAAGAGATCAGTTCTCAACAAGAGACCCATCATGGAGAGGTCAAACACACGGACCAGTTTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000001881-'10-8,'10-7,11-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.074 A=0.000 C2=0.286
Domain overlap (PFAM):
C1:
PF0062516=Guanylate_kin=PU(8.4=55.6)
A:
PF0062516=Guanylate_kin=FE(10.7=100)
C2:
PF0062516=Guanylate_kin=FE(19.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATCCATGAGGCCTGTGGTTC
R:
GTCCGTGTGTTTGACCTCTCC
Band lengths:
143-202
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]