DreEX6038543 @ danRer10
Exon Skipping
Gene
ENSDARG00000102506 | lrp2a
Description
low density lipoprotein receptor-related protein 2a [Source:ZFIN;Acc:ZDB-GENE-050119-2]
Coordinates
chr9:48889220-48894707:+
Coord C1 exon
chr9:48889220-48889509
Coord A exon
chr9:48891334-48891534
Coord C2 exon
chr9:48894684-48894707
Length
201 bp
Sequences
Splice sites
3' ss Seq
ACTTCCTTTATTTCCTCCAGGTC
3' ss Score
11.84
5' ss Seq
GCGGTAAGA
5' ss Score
9.63
Exon sequences
Seq C1 exon
ACAGAAGATTGAGAGGTGCTCGCTCACCGGCACTAACCGTGAGGTCATTGTAAGCACCGCCATTTACCCATTTGCAATGACAGTTTATGATCAGCATATCTACTGGACGGACTGGAACACGCGCAGCATCTACCGCGCAAACAAGCACGACGGGTCTGATCAGAGGGTGATGCTACAAAATCTTCCATCTCGACCCATGGACATCCACGTCTTATCTAACAGCAAACAGCAGCAGTGCAGCAGTCCCTGCGAACAGTTCAACGGTGGATGCAGCCACATTTGCACTCCAG
Seq A exon
GTCCTCAGGGAGCAGAGTGTCAGTGTCCTTCAGAGGGCCGCTGGTATCTGGCCGACAACAAACACTGTATTCCTGACAATGGCACGCGCTGCCAGCCCGGGCAGTTTACTTGCATGAATGGCCGCTGTATCCGCTCACAGTGGAAATGCGACAATGATGATGACTGTGGAGATGGCAGTGATGAACTGGAAAGGGTCTGCG
Seq C2 exon
GATCCAAACATCATTTTGTTTTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000102506-'43-51,'43-50,44-51=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.051 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005812=Ldl_recept_b=PD(74.4=29.6),PF0005812=Ldl_recept_b=WD(100=40.8),PF146701=FXa_inhibition=PU(37.8=14.3)
A:
PF146701=FXa_inhibition=PD(59.5=32.4),PF0005713=Ldl_recept_a=WD(100=57.4)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]