DreEX6038603 @ danRer10
Exon Skipping
Gene
ENSDARG00000053583 | cers6
Description
ceramide synthase 6 [Source:ZFIN;Acc:ZDB-GENE-070522-1]
Coordinates
chr9:49183155-49188348:-
Coord C1 exon
chr9:49188256-49188348
Coord A exon
chr9:49183615-49183743
Coord C2 exon
chr9:49183155-49183261
Length
129 bp
Sequences
Splice sites
3' ss Seq
GTGTGTGTGTTTTTCTGCAGGAT
3' ss Score
12.27
5' ss Seq
GAGGTCAGT
5' ss Score
7.7
Exon sequences
Seq C1 exon
CCGTTAACAGTGGATCTACATTACTACTATATACTGGAGCTCTCTTTCTACCTGTCGCTGCTCTTCTCGCAGTTCACAGACATCAGAAGAAAG
Seq A exon
GATTTTGTGCTGATGTTCGTGCATCACGTGTCCACCATCTCTCTGCTTAGTTTCTCCTATGTGAATAATATGGCTCGAGTGGGAACGCTGGTCTTATGTCTGCACGACGCCGCCGACGTCCTGCTCGAG
Seq C2 exon
GCTGCTAAGATGGCGAACTATGTGAAGTGCCAGCGTCTCTGCCCGCTGCTCTTCGTCATGTTCGCACTGGTCTTCATGGGCTCCAGACTGGCACTTTACCCTGTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000053583-'6-6,'6-5,7-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0379811=TRAM_LAG1_CLN8=FE(15.5=100)
A:
PF0379811=TRAM_LAG1_CLN8=FE(21.6=100)
C2:
PF0379811=TRAM_LAG1_CLN8=FE(18.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGTTAACAGTGGATCTACATTACT
R:
AGGGTAAAGTGCCAGTCTGGA
Band lengths:
195-324
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]