DreEX6042461 @ danRer10
Exon Skipping
Gene
ENSDARG00000073952 | slc4a7
Description
solute carrier family 4, sodium bicarbonate cotransporter, member 7 [Source:ZFIN;Acc:ZDB-GENE-140106-104]
Coordinates
chr16:42800475-42805249:-
Coord C1 exon
chr16:42805088-42805249
Coord A exon
chr16:42802524-42802775
Coord C2 exon
chr16:42800475-42800543
Length
252 bp
Sequences
Splice sites
3' ss Seq
ACATGACTCTTGTTCTGCAGAAA
3' ss Score
7.94
5' ss Seq
AAGGTATGG
5' ss Score
9.26
Exon sequences
Seq C1 exon
CCCACCTCTAAGAATCGGGGTTGGCTTATATCTCCTCTGGGGGATAATCCCACATGGACACTGTTTGCAGCCGCTATTCCTGCCCTCCTGTGCACCATCCTCATCTTCATGGACCAGCAGATCACCGCTGTCATCATCAACCGCAAAGAACACAAGCTCAAG
Seq A exon
AAAGGCTGCGGGTATCACCTTGATCTTTTGGTGGTGGCTGTGATGCTCGGCGTGTGCTCCATCATGGGTTTGCCCTGGTTTGTCGCTGCCACAGTCCTCTCCATCTCTCATGTCAACAGTCTGAAGGTGGAGTCGGAGTGTTCGGCTCCAGGAGAACAGCCCAAGTTCCTTGGCATCCGTGAGCAGAGGGTCACCGGCCTCATGATCTTTGTGCTTATGGGACTTTCTGTTTTTATGACATCGATACTCAAG
Seq C2 exon
TTTATACCAATGCCTGTGTTATATGGAGTGTTCCTCTACATGGGTGTCTCCTCACTGAGAGGCATACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000073952-'26-25,'26-23,27-25=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0095516=HCO3_cotransp=FE(10.5=100)
A:
PF0095516=HCO3_cotransp=FE(16.3=100)
C2:
PF0095516=HCO3_cotransp=FE(4.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCACCTCTAAGAATCGGGGT
R:
CTCTCAGTGAGGAGACACCCA
Band lengths:
223-475
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]