GgaEX6019427 @ galGal3
Exon Skipping
Gene
ENSGALG00000011405 | SLC4A7
Description
NA
Coordinates
chr2:38444076-38446986:-
Coord C1 exon
chr2:38446825-38446986
Coord A exon
chr2:38446278-38446529
Coord C2 exon
chr2:38444076-38444144
Length
252 bp
Sequences
Splice sites
3' ss Seq
TTCTTTGCTTGATTTCACAGAAA
3' ss Score
9.16
5' ss Seq
AAGGTAGGA
5' ss Score
9.45
Exon sequences
Seq C1 exon
CCCACACATAAGGACCGAGGGTGGTTCATAGACCCTCTTGGAGGCAATCCTTGGTGGACGCTCCTGGTAGCTGCTGTTCCTGCTTTACTCTGTACCATTCTCATTTTCATGGATCAACAAATAACAGCTGTTATTATAAACAGAAAAGAGCATAAGCTCAAG
Seq A exon
AAAGGCTGTGGTTATCATCTTGATCTTTTCATGGTTGGTATTATGTTGGGAGTCTGTTCCATAATGGGCTTACCGTGGTTTGTCGCAGCAACTGTCCTGTCTATAAGTCATGTTAACAGCCTTAAAGTTGAATCTGAGTGTTCTGCACCAGGAGAGCAACCAAAGTTTTTGGGAATCCGGGAGCAGCGAGTGACAGGATTGATGATTTTTGTCCTGATGGGGCTGTCAGTGTTCATGACCTCTGTGTTAAAG
Seq C2 exon
TTTATTCCAATGCCAGTTCTGTACGGTGTCTTTCTTTACATGGGAGTGTCTTCATTAAAGGGCATTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011405-'38-39,'38-36,39-39=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0095516=HCO3_cotransp=FE(10.3=100)
A:
PF0095516=HCO3_cotransp=FE(16.1=100)
C2:
PF0095516=HCO3_cotransp=FE(4.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCACACATAAGGACCGAGGGT
R:
GAATGCCCTTTAATGAAGACACTCC
Band lengths:
228-480
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]