DreEX6044274 @ danRer10
Exon Skipping
Gene
ENSDARG00000057583 | prrc2c
Description
proline-rich coiled-coil 2C [Source:ZFIN;Acc:ZDB-GENE-081104-156]
Coordinates
chr20:15131683-15134255:-
Coord C1 exon
chr20:15134021-15134255
Coord A exon
chr20:15133615-15133923
Coord C2 exon
chr20:15131683-15131786
Length
309 bp
Sequences
Splice sites
3' ss Seq
TTCCTTTGTGTAATCTGCAGCGT
3' ss Score
8.42
5' ss Seq
AAGGTTTGT
5' ss Score
7.81
Exon sequences
Seq C1 exon
GTCTCAGCAGGCATTCATGCAGAACAGCCTCTCCCAGACGTCTCCCATGATGCTATCTGGGACTCCGCTGCACAGTTACCCTGGAGTGCAGCCCCCAGACTTGGGCAAGCCTCAGTCCAGCTTGGCCTTCCAGCAAACCTCAAGCACCCAACACATCCCTATCCTATTCGAGCCCCAGCTGAACCAGCCTTCTGGCATGGGAGGATCACAGCTGATAGACACTCACCTGCTGCAG
Seq A exon
CGTCAGGGGTTGGGTCAGCACTCAAACCTGTACTCTGGGCAAGTCCAGCAGCAGAGCAGCTACTACAGCTCAACACAAAGCCCCAGCTCTGCCCTGCAGCAGGTGACCGTTCCAGTGCCTGGTTCACAGTTGTCTTTACCCAACTTTGGCTCTGGTGGAGGTCAGCCGCTCTTGGCTTTGCCTCAGTCTCTTCCGCCGACTCCTCCTCAAGCGCCACCTCCCAGCCTCAACCGGCAGCCACCCAACAATCCGCCCTACCGTGGCCTCATTGGCCAAAACACACACAGCATGATGCAGCCTTCCAACAAG
Seq C2 exon
ATGTGTGAGATGGATCTGAAGCTCTTCAGTGGTGGAATTGATGTGAAACCTGGAACGCCACCTGTCAGCGCCAGGAGCACCACCCCCACCTCTAGCCCTTATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000057583-'31-40,'31-36,33-40=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.949 A=0.990 C2=0.971
Domain overlap (PFAM):
C1:
PF046848=BAF1_ABF1=PD(0.1=0.0)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCATGCAGAACAGCCTCTCC
R:
CTATAAGGGCTAGAGGTGGGGG
Band lengths:
326-635
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]