DmeEX6001642 @ dm6
Exon Skipping
Gene
FBgn0261710 | nocte
Description
The gene no circadian temperature entrainment is referred to in FlyBase by the symbol Dmel
octe (CG17255, FBgn0261710). It is a protein_coding_gene from Dmel. It has 5 annotated transcripts and 5 polypeptides (2 unique). Gene sequence location is X:10461865..10474675. Its molecular function is described by: . It is involved in the biological process described with: temperature compensation of the circadian clock; entrainment of circadian clock. 12 alleles are reported. No phenotypic data is available. The phenotypic classes of alleles include: locomotor rhythm defective; lethal; uncoordinated.
Coordinates
chrX:10463818-10471538:-
Coord C1 exon
chrX:10465585-10471538
Coord A exon
chrX:10465143-10465247
Coord C2 exon
chrX:10463818-10465067
Length
105 bp
Sequences
Splice sites
3' ss Seq
TCACATGCTTTCATTCGCAGATG
3' ss Score
10.81
5' ss Seq
GCGGTAGGT
5' ss Score
9
Exon sequences
Seq C1 exon
AGAGCCAGCAGACAATCGGTGCCATTGGCTCCAAGTCGGCAGGTAGCGGTGGCGGTCCAGGACCAGGACCTGGTCCCTATGCCACCACCCAGACGTATATGAATCTTTATGCGGCTCCACCGCCGCAACATCCAGGACAAGGTGGACCACCGCCGGGTGCCCATCAGCTGCAGTCGAACAGTTTCTACTCGAATTCGGCGCCAGGCGGTCCGAGCGGACCACAGTTCTACGGTGGTCCGCCGCCGCAGGGCAATGGTGGAGCGCAGAGCTATGGACTGGCCACCGCGGCCGGCATGTATGGCGGCCATCAGGGCGGACCGCCCGGCTCCAATGGGCCGCCGGGACCGCCGCAGTCGCAGCACACGATGGGCACGTTCAACACGCCGTTCATGAACTCGCAGCTGCTGACGGCGGCCAGCATTAATCAGTACCGCGGCGGACCAACGCCTGGAGCGGCTTATCTCAAGGGTAACCAGGGCCAGACACACATGCAAGACTCG
Seq A exon
ATGGGTCGTCAGCTGAAGAGTCCGCTGAGCGCTGACATGAGCCTCGGTCTGGCCAAGCAGGTGCAGTCGCAGCCCAGTCCACCGCATCACAAGAACTACGGCGCG
Seq C2 exon
TGGGATCTGCAGAACCAGGTGCTTCAGCAGCAGCAGCAGCAATCTCAGCAGCAACAGCAGCAGCAACAGCGCCAGGTCGGCGGCGGCAATGGTCCGAGCATGAACGCCTTGGGCGGTCGCGGCAGTGGAGCGGTGGGCAGCGGCAGCGGCAACGGCGGAGGAGGAGGAGGAGGAGCTGGTGGGTCCCAAGTGGGCGGCAATGGCGGCGGTAACGGCGTTGGCAGCGTGGGCCAAAGTGGCGGCGGCGGCCAGGGACGCTATCCCACGCCCATTCAGCGGCCCAACAACTATCCGCAGCATCCGCAACAACAGCAGCAACAACAGCAGCAACAGCAACAGCAGAGAGAGCAGGCGGCAGCTGCCGCCGTGGCGGCTCAGCGGGCACAGAATATGCGACAGGTGACCGGTGCCGGCGGAGGCGTGGCCGGAAGTGCAGGTGGCGGTGGTAGTCAAACACCAGTGGGACCGGCCGGCGGCAATGGTGGCCCCGGTGGCGCAGG
VastDB Features
Vast-tools module Information
Secondary ID
FBgn0261710-'13-6,'13-5,14-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.937 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF070016=BAT2_N=PD(51.7=4.6),PF043607=Serglycin=WD(100=4.7)
A:
NO
C2:
NO
Main Inclusion Isoform:
FBpp0071394
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
FBpp0071395, FBpp0298823, FBpp0305169
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CATGTATGGCGGCCATCAGG
R:
CTGAGATTGCTGCTGCTGCT
Band lengths:
256-361
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Neural diversity
- Neurogenesis
- Neuronal activity
- Splicing factor regulation (brain)
- Splicing factor regulation (SL2)