HsaEX6034894 @ hg38
Exon Skipping
Gene
ENSG00000117523 | PRRC2C
Description
proline rich coiled-coil 2C [Source:HGNC Symbol;Acc:HGNC:24903]
Coordinates
chr1:171584419-171587751:+
Coord C1 exon
chr1:171584419-171584526
Coord A exon
chr1:171587003-171587221
Coord C2 exon
chr1:171587648-171587751
Length
219 bp
Sequences
Splice sites
3' ss Seq
TCTCTTTACTTATTTTCTAGGTT
3' ss Score
11.18
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
Exon sequences
Seq C1 exon
GCCAGAGCAAATCTTACCCAGGCCTCAAATCTTTATTCTGGACAAGTACAACAGCCTGGTCAGACAAATTTTTATAACACTGCCCAGTCACCAAGTGCTCTCCAGCAG
Seq A exon
GTTACAGTACCTTTACCAGCATCGCAGCTTTCCTTGCCTAATTTTGGATCTACAGGGCAACCTCTAATTGCTTTGCCTCAGACTCTTCAGCCCCCATTACAGCATACCACTCCCCAAGCACAGGCTCAGAGTCTGAGTCGTCCTGCACAAGTAAGCCAGCCTTTCAGAGGATTAATTCCTGCTGGAACACAGCATAGCATGATTGCAACCACAGGAAAA
Seq C2 exon
ATGTCTGAAATGGAACTAAAAGCCTTTGGAAGTGGCATTGATATAAAACCAGGCACACCTCCAATCGCTGGTAGAAGCACCACACCAACATCTAGTCCCTTCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000117523-'82-99,'82-96,85-99
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.581 A=0.863 C2=0.939
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCAGAGCAAATCTTACCCAGG
R:
CGGAAGGGACTAGATGTTGGTG
Band lengths:
212-431
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains