HsaEX6034894 @ hg19
Exon Skipping
Gene
ENSG00000117523 | BAT2D1
Description
proline-rich coiled-coil 2C [Source:HGNC Symbol;Acc:24903]
Coordinates
chr1:171553558-171556890:+
Coord C1 exon
chr1:171553558-171553665
Coord A exon
chr1:171556142-171556360
Coord C2 exon
chr1:171556787-171556890
Length
219 bp
Sequences
Splice sites
3' ss Seq
TCTCTTTACTTATTTTCTAGGTT
3' ss Score
11.18
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
Exon sequences
Seq C1 exon
GCCAGAGCAAATCTTACCCAGGCCTCAAATCTTTATTCTGGACAAGTACAACAGCCTGGTCAGACAAATTTTTATAACACTGCCCAGTCACCAAGTGCTCTCCAGCAG
Seq A exon
GTTACAGTACCTTTACCAGCATCGCAGCTTTCCTTGCCTAATTTTGGATCTACAGGGCAACCTCTAATTGCTTTGCCTCAGACTCTTCAGCCCCCATTACAGCATACCACTCCCCAAGCACAGGCTCAGAGTCTGAGTCGTCCTGCACAAGTAAGCCAGCCTTTCAGAGGATTAATTCCTGCTGGAACACAGCATAGCATGATTGCAACCACAGGAAAA
Seq C2 exon
ATGTCTGAAATGGAACTAAAAGCCTTTGGAAGTGGCATTGATATAAAACCAGGCACACCTCCAATCGCTGGTAGAAGCACCACACCAACATCTAGTCCCTTCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000117523-'40-43,'40-41,41-43=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.580 A=0.862 C2=0.938
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCAGAGCAAATCTTACCCAGG
R:
CGGAAGGGACTAGATGTTGGTG
Band lengths:
212-431
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)