GgaEX1046438 @ galGal3
Exon Skipping
Gene
ENSGALG00000003776 | PRRC2B
Description
NA
Coordinates
chr17:6839884-6841999:+
Coord C1 exon
chr17:6839884-6840124
Coord A exon
chr17:6841100-6841276
Coord C2 exon
chr17:6841908-6841999
Length
177 bp
Sequences
Splice sites
3' ss Seq
TACATGTCCTTCTCACATAGCTA
3' ss Score
6.31
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
Exon sequences
Seq C1 exon
GTCTCAGGTGTATATGCACCCCAGTCTATCTCAGCCCAGCACCATGGTCCTGACAGGAGGCACTGCTCTAAAGCCTCCATATTCCGCCTTCCCAGGCATGCAGCCCTTGGAGGTGGTGAAAACCCAGTCTGGATCTCCCTATCAGCCCTTGAATGGAAGCCAGACGCTGGTTTATGAAGGCCAGATAAACCAAGCAGCTGGTATGGGAGCCTCCCAGATGATGGACTCTCAGCTTACACAG
Seq A exon
CTAACAATGCCTGTGCCTGGCTCCCAGCTTCCGCTGCCTCGCTATGGCTCTGGCCAGCAGCCCCTGATTCTGCCACAGTCCATCCAGCTTCCTCAAGGGCAAAACCTGTCTGTAGGAGCTCCCCGAAGAATTCTTCCTCCTGGGTCACAGCCTTCAGTTCTTGCTGCCAGCAGGGAG
Seq C2 exon
TCCTCCCAAATGGAAATGAAAGGCTTTCATTTTTCTGATGGTAAACAGAATATGTCCTCTGGAGGGTCTGTACCGTCACCACACGCATACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003776-'35-43,'35-39,36-43=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.488 A=0.873 C2=0.838
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TCCATATTCCGCCTTCCCAGG
R:
GACGGTACAGACCCTCCAGAG
Band lengths:
243-420
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]