MmuEX0037402 @ mm9
Exon Skipping
Gene
ENSMUSG00000039262 | Prrc2b
Description
proline-rich coiled-coil 2B [Source:MGI Symbol;Acc:MGI:1923304]
Coordinates
chr2:32079449-32082556:+
Coord C1 exon
chr2:32079449-32079689
Coord A exon
chr2:32081751-32081906
Coord C2 exon
chr2:32082465-32082556
Length
156 bp
Sequences
Splice sites
3' ss Seq
ACTGTGCTGTCACCCAACAGCTC
3' ss Score
8.75
5' ss Seq
GAGGTAAAG
5' ss Score
8.27
Exon sequences
Seq C1 exon
GTCTCAGGTGTACATGCACCCCAGCCTGTCACCACCCAGCACGATGATCCTCTCAGGGGGTACAGCCTTGAAGCCCCCATACTCTGCATTTCCTGGCATACAGCCCTTGGAGATGGTGAAGCCCCAGTCTGGCTCACCCTACCAGCCCATGAGTGGAAACCAGGCCCTGGTCTACGAGGGCCAGCTTGGCCAGGCTGCCGGGCTGGGCACCTCCCAGATGCTGGATTCCCAGCTCCCACAG
Seq A exon
CTCACTATGCCACTGCCTCGGTATGGCTCCGGGCAGCAGCCACTGATCCTGCCACAGTCCATCCAGCTGCCTCCAGGACAGAGTCTCTCTGTTGGAGCCCCCCGGAGGGTTCCTCCACCTGGCTCCCAACCTCCCGTCCTGAACACCAGCAGAGAG
Seq C2 exon
TCCGCTCCGATGGAGTTGAAAGGCTTCCACTTTGCCGACAGTAAACAGAATGTTCCTACTGGAGGGTCCGCACCATCCCCGCAGGCATACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000039262_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.590 A=0.992 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
AGCACGATGATCCTCTCAGGG
R:
TACTGTCGGCAAAGTGGAAGC
Band lengths:
247-403
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: