BtaEX6046885 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000004400 | PRRC2B
Description
proline-rich coiled-coil 2B [Source:HGNC Symbol;Acc:HGNC:28121]
Coordinates
chr11:101636900-101640374:+
Coord C1 exon
chr11:101636900-101637140
Coord A exon
chr11:101639654-101639830
Coord C2 exon
chr11:101640283-101640374
Length
177 bp
Sequences
Splice sites
3' ss Seq
CTATGCCCCTTGTCCGGCAGCTG
3' ss Score
8.18
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
Exon sequences
Seq C1 exon
GTCTCAGGTGTACATGCACCCCAGCCTGTCACCGCCCAGCACCATGATCCTCTCCGGAGGCACAGCCTTGAAGGCCCCCTACTCGGCGTTCCCAGGCATGCAGCCCCTGGAGATGGTGAAGCCCCAGTCCGGCTCGCCCTACCAGCCCATGAGTGGGAGCCAGGCCCTGGTCTATGAGGGCCCGCTCAGCCAGGCGGCTGGGCTTGGCGCCTCCCAGATGTTGGACTCCCAGCTCCCGCAG
Seq A exon
CTGACGATGCCCCTGCCTGGCTCCCAGCTGCCTCTGCCCCGGTACGGCTCCGGGCAGCAGCCCCTGCTCCTGCCACAGTCCATCCAGCTGCCCCAGGCGCAGAGCCTGTCAGTCGGGGCCCCCCGCAGGATCCTTGCCCCCGGGTCCCAGCCTTCGGTCCTCAACACCAGCAGAGAG
Seq C2 exon
TCCTCTCAGATGGAGATGAAGGGCTTCCACTTTGCCGACAGTAAACAGAATGTTCCTTCAGGAGGCTCCGTGCCGTCACCACAGGCCTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004400-'42-51,'42-50,44-51=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.395 A=0.949 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CCCAGCACCATGATCCTCTCC
R:
TACTGTCGGCAAAGTGGAAGC
Band lengths:
250-427
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]