DreEX0007118 @ danRer10
Exon Skipping
Gene
ENSDARG00000079639 | PRRC2B
Description
proline-rich coiled-coil 2B [Source:HGNC Symbol;Acc:HGNC:28121]
Coordinates
chr5:71240116-71242280:-
Coord C1 exon
chr5:71242052-71242280
Coord A exon
chr5:71240772-71240936
Coord C2 exon
chr5:71240116-71240195
Length
165 bp
Sequences
Splice sites
3' ss Seq
ATAAATGTGTGTGTTTTCAGGTG
3' ss Score
10.11
5' ss Seq
GAGGTCAAA
5' ss Score
-0.31
Exon sequences
Seq C1 exon
GTCTCAGGTGTACATGCACCCTAACCTGTCCCAGGCGAGCCCCATGGTGCTGTCGGGTGGAGCTGCTCTGAAAGGGCCGTACTCCGCCTTCCCCGGCCTGCAGCCCTCAGACCTGGTCAAATCTCAGTCCGGATCCCACTACCAGCCCATCAACGGCAGCACGCCACTGGTGTACGACCAGCCCACAGGCATGAGCACCTCACAGCTGATGGACTCGCAGCTCATTCAG
Seq A exon
GTGACGATGCCGATGCCAGGCTCTCAGCTGCGCTATGGTTCAGCCCAGCAGCACCTCATCCTCCCGCAGTCCATCCAGCTCCAGCAGAACCAGAATCTGTCTGTGGGAGCTCCACGCCGCATGATGCCCCCAGGGTCACAGCCAGTGCTAAGCGGCAGCAGAGAG
Seq C2 exon
GTTTCACAGATGGACATGAAAGGCTTTCAGTTCTCAGATAAACCCAGCCACTCTCCTGGAATACCCAGCGGCTCATACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000079639-'35-40,'35-39,37-40
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.506 A=0.855 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTCTGAAAGGGCCGTACTC
R:
TATGAGCCGCTGGGTATTCCA
Band lengths:
243-408
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]