RnoEX0070292 @ rn6
Exon Skipping
Gene
ENSRNOG00000010217 | Prrc2b
Description
proline-rich coiled-coil 2B [Source:RGD Symbol;Acc:1595906]
Coordinates
chr3:11242189-11245206:+
Coord C1 exon
chr3:11242189-11242429
Coord A exon
chr3:11244357-11244512
Coord C2 exon
chr3:11245115-11245206
Length
156 bp
Sequences
Splice sites
3' ss Seq
ACTGTCCTGTCACCCAACAGCTA
3' ss Score
9.04
5' ss Seq
GAGGTAAAG
5' ss Score
8.27
Exon sequences
Seq C1 exon
GTCTCAGGTGTACATGCACCCCAGCCTGTCACCACCCAGCACTATGATCCTCTCTGGGGGCACGGCCTTGAAACCCCCATACTCTGCATTTCCCGGCATACAGCCCTTGGAGATGGTGAAGCCACAATCTGGCTCACCCTACCAGCCCATGAGTGGAAACCAGGCCCTGGTCTATGAGGGCCAACTCGGCCAGGCTGCTGGGCTGGGTGCCTCCCAGATGCTGGACTCCCAGCTCCCACAG
Seq A exon
CTAACTATGCCACTGCCTCGGTATGGCTCCGGGCAGCAGCCACTGATCCTGCCACAGTCCATTCAGCTGCCTCCAGGACAGAGTCTCTCCGTTGGAGCCCCCCGGAGGATTCCTCCACCTGGCTCCCAACCACCAGTCCTGAACACCAGCAGAGAG
Seq C2 exon
TCCACTCAGATGGAGTTGAAAGGCTTCCACTTTGCCGACAATAAACAGAATGTTTCTACCGGAGGCTCCGCACCATCCCCGCAGGCCTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010217-'52-66,'52-65,55-66
Average complexity
S
Mappability confidence:
90%=100=75%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.504 A=0.988 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TGTCACCACCCAGCACTATGA
R:
TCGGCAAAGTGGAAGCCTTTC
Band lengths:
253-409
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]