HsaEX6063587 @ hg19
Exon Skipping
Gene
ENSG00000130723 | BAT2L
Description
proline-rich coiled-coil 2B [Source:HGNC Symbol;Acc:28121]
Coordinates
chr9:134363243-134367647:+
Coord C1 exon
chr9:134363243-134363483
Coord A exon
chr9:134366812-134366967
Coord C2 exon
chr9:134367556-134367647
Length
156 bp
Sequences
Splice sites
3' ss Seq
CTGTCATTGTCGCCCAGCAGCTG
3' ss Score
5.81
5' ss Seq
GAGGTAAGG
5' ss Score
10.28
Exon sequences
Seq C1 exon
ATCTCAGGTGTACATGCACCCCAGCCTGTCACCGCCCAGCACCATGATCCTCTCTGGGGGCACAGCCTTGAAGCCTCCATACTCGGCGTTCCCAGGCATGCAGCCCTTGGAGATGGTGAAGCCGCAGTCTGGCTCACCCTACCAGCCCATGAGCGGGAACCAAGCCCTGGTCTACGAGGGCCAGCTCAGCCAGGCTGCTGGCCTGGGTGCCTCCCAGATGTTGGACTCCCAGCTCCCACAG
Seq A exon
CTGACCATGCCACTGCCTCGGTACGGCTCCGGGCAGCAGCCACTGATCCTGCCCCAGTCTATTCAGCTGCCACCTGGGCAGAGCCTCTCCGTTGGGGCCCCCCGAAGGATTCCTCCGCCCGGGTCCCAGCCGCCAGTCCTGAACACCAGCAGAGAG
Seq C2 exon
CCCTCTCAGATGGAGATGAAAGGCTTCCACTTTGCCGACAGTAAACAGAATGTCCCTTCAGGAGGCCCCGTGCCATCGCCACAGACCTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000130723-'39-48,'39-47,41-48=AN
Average complexity
A_S
Mappability confidence:
89%=80=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.611 A=0.979 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
AGCACCATGATCCTCTCTGGG
R:
TACTGTCGGCAAAGTGGAAGC
Band lengths:
247-403
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)